Evidence map›Paper›PMID 23001569›Full record

SynthesisHuman molecular genetics2013

Gene-centric meta-analyses of 108 912 individuals confirm known body mass index loci and reveal three novel signals.

Yiran Guo, Matthew B Lanktree, Kira C Taylor, Hakon Hakonarson, Leslie A Lange, Brendan J Keating, IBC 50K SNP array BMI Consortium

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Human molecular genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 11 pooled it
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 11 syntheses or guidelines pooled it, 86 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Yiran GuoCenter for Applied Genomics, Children’s Hospital of Philadelphia, Abramson Research Center, Philadelphia, PA 19104, USA.
Matthew B Lanktree
Kira C Taylor
Hakon Hakonarson
Leslie A Lange
Brendan J Keating
IBC 50K SNP array BMI Consortium
Children's Hospital of Philadelphia · USBGI Group (China) · CNUniversity of Louisville · USUniversity of North Carolina at Chapel Hill · USWestern University · CA

Funding

Look AHEAD: Action for Health in DiabetesU01DK057136 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ESPELAND, MARK ANDREW, WAGENKNECHT, LYNNE E · 1999 to 2020
$54.9M
Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI REBECCA LUCY HULL-MEICHLE · 1986 to 2026
$41.4M
FAMILIAL AND BIRTH COHORT EFFECTS ON THE AGING SENSESR01AG021917 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI CRUICKSHANKS, KAREN J · 2004 to 2018
$25.2M
Research BaseP30DK072488 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI MITCHELL, BRAXTON D, TAYLOR, SIMEON I. · 2005 to 2019
$17.3M
STUDY OF HEALTH OUTCOMES OF WEIGHT-LOSS (SHOW)U01DK057131 · NIDDK · UNIVERSITY OF WASHINGTON · PI KAHN, STEVEN EMANUEL · 1999 to 2020
$16.0M
ROLE OF MICROPARTICLES IN THE ANTI-PHOSPHOLIPID SYNDROMEP50HL081011 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI MCINTYRE, THOMAS · 2006 to 2010
$12.9M
Depression, Biobehavioral Mechanisms, & CHD/Mortality OutcomesP01HL088117 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DAVIDSON, KARINA W. · 2008 to 2013
$12.5M
EVOLUTION OF CARDIOVASCULAR RISK WITH NORMAL AGINGR01AG016592 · NIA · TULANE UNIVERSITY OF LOUISIANA · PI CHEN, WEI · 2000 to 2015
$11.7M
Epidemiology of Age-related Hearing LossR37AG011099 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI CRUICKSHANKS, KAREN J · 2009 to 2018
$7.4M
Genomics of myocardial transcription factors in cardiac remodelingR01HL088577 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CAPPOLA, THOMAS P. · 2007 to 2013
$5.3M
Mechanistic Role of CD36 in ThrombosisR01HL111614 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI SILVERSTEIN, ROY L · 2013 to 2017
$1.7M
Midcareer Mentoring in Behavioral Cardiology: Depression & Cardiovascular DiseaseK24HL084034 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DAVIDSON, KARINA W. · 2006 to 2015
$1.6M
British Heart Foundation PG/09/022/26739British Heart Foundation RG/07/008/23674CIHRMedical Research Council G0100222Medical Research Council G0600705Medical Research Council G0902037Medical Research Council G19/35Medical Research Council G8802774Medical Research Council G9521010Medical Research Council MC_U137686857Medical Research Council MR/K006584/1Medical Research Council MR/K013351/1NCI NIH HHS K07 CA136969NHLBI NIH HHS K24 HL084034NHLBI NIH HHS L30 HL097857NHLBI NIH HHS P01 HL088117NHLBI NIH HHS P50 HL081011NHLBI NIH HHS R01 HL088577NHLBI NIH HHS R01 HL091099NHLBI NIH HHS R01 HL111614NIA NIH HHS R01 AG016592NIA NIH HHS R01 AG021917NIA NIH HHS R37 AG011099NIDDK NIH HHS K23 DK097307NIDDK NIH HHS P30 DK017047NIDDK NIH HHS P30 DK072488NIDDK NIH HHS U01 DK057131NIDDK NIH HHS U01 DK057136Wellcome Trust 090532
6 · The paper itself

Abstract

Recent genetic association studies have made progress in uncovering components of the genetic architecture of the body mass index (BMI). We used the ITMAT-Broad-Candidate Gene Association Resource (CARe) (IBC) array comprising up to 49 320 single nucleotide polymorphisms (SNPs) across ~2100 metabolic and cardiovascular-related loci to genotype up to 108 912 individuals of European ancestry (EA), African-Americans, Hispanics and East Asians, from 46 studies, to provide additional insight into SNPs underpinning BMI. We used a five-phase study design: Phase I focused on meta-analysis of EA studies providing individual level genotype data; Phase II performed a replication of cohorts providing summary level EA data; Phase III meta-analyzed results from the first two phases; associated SNPs from Phase III were used for replication in Phase IV; finally in Phase V, a multi-ethnic meta-analysis of all samples from four ethnicities was performed. At an array-wide significance (P < 2.40E-06), we identify novel BMI associations in loci translocase of outer mitochondrial membrane 40 homolog (yeast) - apolipoprotein E - apolipoprotein C-I (TOMM40-APOE-APOC1) (rs2075650, P = 2.95E-10), sterol regulatory element binding transcription factor 2 (SREBF2, rs5996074, P = 9.43E-07) and neurotrophic tyrosine kinase, receptor, type 2 [NTRK2, a brain-derived neurotrophic factor (BDNF) receptor gene, rs1211166, P = 1.04E-06] in the Phase IV meta-analysis. Of 10 loci with previous evidence for BMI association represented on the IBC array, eight were replicated, with the remaining two showing nominal significance. Conditional analyses revealed two independent BMI-associated signals in BDNF and melanocortin 4 receptor (MC4R) regions. Of the 11 array-wide significant SNPs, three are associated with gene expression levels in both primary B-cells and monocytes; with rs4788099 in SH2B adaptor protein 1 (SH2B1) notably being associated with the expression of multiple genes in cis. These multi-ethnic meta-analyses expand our knowledge of BMI genetics.

Indexed as

Body Mass IndexCohort StudiesEthnicityHumansPolymorphism, Single Nucleotide

Identifiers

PMID23001569
PMCPMC3522401
OpenAlexW2135895196

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.