Evidence map›Paper›PMID 23001565›Full record

ArticleHuman molecular genetics2012

A conserved eEF2 coding variant in SCA26 leads to loss of translational fidelity and increased susceptibility to proteostatic insult.

Katherine E Hekman, Guo-Yun Yu, Christopher D Brown, Haipeng Zhu, Xiaofei Du, Kristina Gervin, Dag Erik Undlien, April Peterson, Giovanni Stevanin, H Brent Clark and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 71 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 3 countries.

Katherine E HekmanDepartment of Neurology, Institute for Genomics and Systems Biology, University of Chicago, Chicago, IL 60637, USA.
Guo-Yun Yu
Christopher D Brown
Haipeng Zhu
Xiaofei Du
Kristina Gervin
Dag Erik Undlien
April Peterson
Giovanni Stevanin
H Brent Clark
Stefan M Pulst
Thomas D Bird
Kevin P White
Christopher M Gomez
University of Chicago · USUniversity of Oslo · NONational Institutes of Health · USPitié-Salpêtrière Hospital · FRUniversity of Minnesota · USUniversity of Utah · USUniversity of Washington Medical Center · US

Funding

Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
Ruth L. Kirschstein National Research Service Award (NRSA) Institutional Research Training Grant (Parent T32)T32HD007009 · NICHD · UNIVERSITY OF CHICAGO · PI NANCY B SCHWARTZ · 1985 to 2026
$13.0M
Genetic and Molecular Characterization of SCA26R03NS052582 · NINDS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI GOMEZ, CHRISTOPHER MANUEL · 2005 to 2005
$151k
NCATS NIH HHS UL1 TR000430NICHD NIH HHS T32 HD007009NICHD NIH HHS T32 HD009007NINDS NIH HHS R03 NS052582NINDS NIH HHS R03-NS52582
6 · The paper itself

Abstract

The autosomal dominant spinocerebellar ataxias (SCAs) are a genetically heterogeneous group of disorders exhibiting cerebellar atrophy and Purkinje cell degeneration whose subtypes arise from 31 distinct genetic loci. Our group previously published the locus for SCA26 on chromosome 19p13.3. In this study, we performed targeted deep sequencing of the critical interval in order to identify candidate causative variants in individuals from the SCA26 family. We identified a single variant that co-segregates with the disease phenotype that produces a single amino acid substitution in eukaryotic elongation factor 2. This substitution, P596H, sits in a domain critical for maintaining reading frame during translation. The yeast equivalent, P580H EF2, demonstrated impaired translocation, detected as an increased rate of -1 programmed ribosomal frameshift read-through in a dual-luciferase assay for observing translational recoding. This substitution also results in a greater susceptibility to proteostatic disruption, as evidenced by a more robust activation of a reporter gene driven by unfolded protein response activation upon challenge with dithiothreitol or heat shock in our yeast model system. Our results present a compelling candidate mutation and mechanism for the pathogenesis of SCA26 and further support the role of proteostatic disruption in neurodegenerative diseases.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionBlotting, WesternClinical CodingConserved SequenceElongation Factor 2 KinaseGenetic LociGenetic Predisposition to DiseaseGenotypeHEK293 CellsHumansModels, MolecularMolecular Sequence DataMutationPhenotypePlasmidsEEF2K protein, humanElongation Factor 2 KinaseSaccharomyces cerevisiae Proteins

Identifiers

PMID23001565
PMCPMC3516132
OpenAlexW2143891161

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.