Evidence map›Paper›PMID 23000143›Full record

ArticleAmerican journal of human genetics2012

A noncoding, regulatory mutation implicates HCFC1 in nonsyndromic intellectual disability.

Lingli Huang, Lachlan A Jolly, Saffron Willis-Owen, Alison Gardner, Raman Kumar, Evelyn Douglas, Cheryl Shoubridge, Dagmar Wieczorek, Andreas Tzschach, Monika Cohen and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 107 citations in OpenAlex.

  1. Article
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  6. Review
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  11. Review
  12. Abnormal chondrocyte intercalation in a zebrafish model ofbioRxiv : the preprint server for biology · 2023
    Article
  13. Identification of two novel autism genes,Frontiers in psychiatry · 2023
    Article
  14. Clinical characteristics and genotype analysis of five infants with cblX type of methylmalonic acidemia.Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2022
    Article
  15. A case of methylmalonic acidemia and homocysteinemia cblX type with negative tandem mass spectrometry testing.Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2021
    Article
  16. Article
  17. 5'-UTR SNP ofeLife · 2021
    Article
  18. Article
  19. Enhancer redundancy in development and disease.Nature reviews. Genetics · 2021
    Review
  20. Emerging and converging molecular mechanisms in dystonia.Journal of neural transmission (Vienna, Austria : 1996) · 2021
    Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 4 countries.

Lingli HuangGenetics and Molecular Pathology, SA Pathology, North Adelaide, SA 5006, Australia.
Lachlan A Jolly
Saffron Willis-Owen
Alison Gardner
Raman Kumar
Evelyn Douglas
Cheryl Shoubridge
Dagmar Wieczorek
Andreas Tzschach
Monika Cohen
Anna Hackett
Michael Field
Guy Froyen
Hao Hu
Stefan A Haas
Hans-Hilger Ropers
Vera M Kalscheuer
Mark A Corbett
Jozef Gecz
South Australia Pathology · AUMax Planck Institute for Molecular Genetics · DEHunter Genetics · AUWomen's & Children's Health Research Institute · AUCentral South University · CNPraxis für Humangenetik · DEVIB-KU Leuven Center for Cancer Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The discovery of mutations causing human disease has so far been biased toward protein-coding regions. Having excluded all annotated coding regions, we performed targeted massively parallel resequencing of the nonrepetitive genomic linkage interval at Xq28 of family MRX3. We identified in the binding site of transcription factor YY1 a regulatory mutation that leads to overexpression of the chromatin-associated transcriptional regulator HCFC1. When tested on embryonic murine neural stem cells and embryonic hippocampal neurons, HCFC1 overexpression led to a significant increase of the production of astrocytes and a considerable reduction in neurite growth. Two other nonsynonymous, potentially deleterious changes have been identified by X-exome sequencing in individuals with intellectual disability, implicating HCFC1 in normal brain function.

Indexed as

MutationAmino Acid SequenceAnimalsAstrocytesBinding SitesChromatinExomeFemaleGenetic Predisposition to DiseaseHost Cell Factor C1HumansIntellectual DisabilityMaleMiceMolecular Sequence DataRNA, UntranslatedChromatinHCFC1 protein, humanHcfc1 protein, mouseHost Cell Factor C1RNA, UntranslatedTranscription FactorsYy1 protein, mouseYY1 Transcription Factor

Identifiers

PMID23000143
PMCPMC3484651
OpenAlexW2009304445

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.