Evidence map›Paper›PMID 22998755›Full record

ArticleVirology journal2012

Complete genome sequence of an astrovirus identified in a domestic rabbit (Oryctolagus cuniculus) with gastroenteritis.

Mark D Stenglein, Eric Velazquez, Cheryl Greenacre, Rebecca P Wilkes, J Graham Ruby, Julia S Lankton, Donald Ganem, Melissa A Kennedy, Joseph L DeRisi

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Molecular methods in detection and epidemiologic studies of rabbit and hare viruses: a review.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2019
    Article
  3. Review
  4. Article
  5. Human astroviruses.Clinical microbiology reviews · 2014
    Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Mark D StengleinDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Eric Velazquez
Cheryl Greenacre
Rebecca P Wilkes
J Graham Ruby
Julia S Lankton
Donald Ganem
Melissa A Kennedy
Joseph L DeRisi
University of California, San Francisco · USKnoxville College · USUniversity of Tennessee at Knoxville · USHoward Hughes Medical Institute · US

Funding

Vaccines and Diagnostics TrialsU54AI065359 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARBOUR, ALAN G. · 2005 to 2013
$88.8M
MUTIDISCIPLINARY TRAINING PROGRAM IN LUNG DISEASEST32HL007185 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI David J Erle, LAURENCE HUANG · 1985 to 2026
$24.6M
UC Davis MARC Scholar ProgramT34GM083894 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI GOMES, ALDRIN V. · 2009 to 2019
$2.1M
Howard Hughes Medical InstituteNHLBI NIH HHS 5T32HL007185-34NIAID NIH HHS U54 AI065359NIGMS NIH HHS T34 GM083894
6 · The paper itself

Abstract

A colony of domestic rabbits in Tennessee, USA, experienced a high-mortality (~90%) outbreak of enterocolitis. The clinical characteristics were one to six days of lethargy, bloating, and diarrhea, followed by death. Heavy intestinal coccidial load was a consistent finding as was mucoid enteropathy with cecal impaction. Preliminary analysis by electron microscopy revealed the presence of virus-like particles in the stool of one of the affected rabbits. Analysis using the Virochip, a viral detection microarray, suggested the presence of an astrovirus, and follow-up PCR and sequence determination revealed a previously uncharacterized member of that family. Metagenomic sequencing enabled the recovery of the complete viral genome, which contains the characteristic attributes of astrovirus genomes. Attempts to propagate the virus in tissue culture have yet to succeed. Although astroviruses cause gastroenteric disease in other mammals, the pathogenicity of this virus and the relationship to this outbreak remains to be determined. This study therefore defines a viral species and a potential rabbit pathogen.

Indexed as

Genome, ViralSequence Analysis, DNAAnimalsAstroviridaeAstroviridae InfectionsEnterocolitisFecesGastroenteritisMicroscopy, ElectronMolecular Sequence DataRabbitsRNA, ViralTennesseeVirus CultivationRNA, Viral

Identifiers

PMID22998755
PMCPMC3502403
OpenAlexW2115689200

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.