Evidence map›Paper›PMID 22996829›Full record

ArticleExtremophiles : life under extreme conditions2012

Distinct features of protein folding by the GroEL system from a psychrophilic bacterium, Colwellia psychrerythraea 34H.

Seiji Yamauchi, Yuya Ueda, Mika Matsumoto, Umihiko Inoue, Hidenori Hayashi

Abstract read
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In one paragraph

Article in Extremophiles : life under extreme conditions, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Model metabolic strategy for heterotrophic bacteria in the cold ocean based onProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Seiji YamauchiCell-Free Science and Technology Research Center, Ehime University, 3 Bunkyo-cho, Matsuyama, 790-8577, Japan. yamauchi@ccr.ehime-u.ac.jp
Yuya Ueda
Mika Matsumoto
Umihiko Inoue
Hidenori Hayashi
Ehime University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigated the protein folding mechanism of the GroEL system of a psychrophilic bacterium, Colwellia psychrerythraea 34H. The amount of mRNA of the groESL operon of C. psychrerythraea was increased about 6-fold after a temperature upshift from 8 to 18 °C for 30 min, suggesting that this temperature causes heat stress in this bacterium. A σ(32)-type promoter was found upstream of the groESL, suggesting that the C. psychrerythraea groESL is regulated by the σ(32) system, like the groESL in E. coli. The maximum ATPase and CTPase activities of CpGroEL were observed at 45 and 35 °C, respectively, which are much higher than the growth temperatures of C. psychrerythraea. We found that the refolding activity of the CpGroEL system in the presence of ATP is lower than that in the presence of CTP. This suggests that ATP is not the optimum energy source of the CpGroEL system. Analyses for the interaction of CpGroEL-CpGroES revealed that CTP could weaken this interaction, resulting in effective refolding function of the CpGroEL system. From these findings, we consider that the CpGroEL system possesses an energy-saving mechanism for avoiding excess consumption of ATP to ensure growth in a low-temperature environment.

Indexed as

Protein FoldingAdenosine Triphosphatealpha-GlucosidasesAlteromonadaceaeAnimalsBacterial ProteinsChaperonin 10Chaperonin 60Cytidine TriphosphateEscherichia coliMalate DehydrogenaseOperonPromoter Regions, GeneticProtein DenaturationRNA, MessengerSaccharomyces cerevisiaeAdenosine Triphosphatealpha-GlucosidasesBacterial ProteinsChaperonin 10Chaperonin 60Cytidine TriphosphateMalate DehydrogenaseRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID22996829
OpenAlexW1981942340

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.