Evidence map›Paper›PMID 22996828›Full record

ArticleExtremophiles : life under extreme conditions2012

Requirement of insertion sequence IS1 for thermal adaptation of Pro-Tk-subtilisin from hyperthermophilic archaeon.

Ryo Uehara, Shun-Ichi Tanaka, Kazufumi Takano, Yuichi Koga, Shigenori Kanaya

Abstract read
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In one paragraph

Article in Extremophiles : life under extreme conditions, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. 'All About' Extremophiles.Faculty reviews · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ryo UeharaDepartment of Material and Life Science, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.
Shun-Ichi Tanaka
Kazufumi Takano
Yuichi Koga
Shigenori Kanaya
Osaka University · JPKyoto Prefectural University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tk-subtilisin from the hyperthermophilic archaeon Thermococcus kodakarensis matures from Pro-Tk-subtilisin (Pro-TKS) upon autoprocessing and degradation of propeptide. Pro-TKS contains the insertion sequence (IS1) at the N-terminus of the mature domain as compared to bacterial pro-subtilisins. To analyze the role of IS1, the Pro-TKS derivative without IS1 (∆IS1-Pro-TKS) and its active-site mutants (∆IS1-Pro-S324A and ∆IS1-Pro-S324C) were constructed and characterized. ∆IS1-Pro-S324A and ∆IS1-Pro-TKS represent an unautoprocessed and autoprocessed form of ∆IS1-Pro-TKS, respectively. The CD and ANS fluorescence spectra of these proteins indicate that folding of ∆IS1-Pro-TKS is not completed by binding of Ca(2+) ions but is completed by the subsequent autoprocessing reaction. Thermal denaturation of these proteins analyzed by DSC and CD spectroscopy indicates that unautoprocessed ∆IS1-Pro-TKS is less stable than autoprocessed ∆IS1-Pro-TKS by 26.3 °C in T (m). The stability of autoprocessed ∆IS1-Pro-TKS is comparable to that of Pro-TKS, which is slightly lower than that of unautoprocessed Pro-TKS. These results suggest that ∆IS1-Pro-TKS is fully folded and greatly stabilized by autoprocessing. ∆IS1-Pro-TKS more slowly matured to ∆IS1-Tk-subtilisin than Pro-TKS did, due to a decrease in the autoprocessing rate. We propose that IS1 is required not only for hyperstabilization of Pro-TKS but also for its rapid maturation.

Indexed as

Adaptation, BiologicalHot TemperatureAmino Acid SequenceArchaeal ProteinsCalciumCatalytic DomainEnzyme PrecursorsMolecular Sequence DataMutagenesis, InsertionalPeptide FragmentsProtein DenaturationProtein StabilitySubtilisinsThermococcusArchaeal ProteinsCalciumEnzyme PrecursorsPeptide FragmentsprosubtilisinSubtilisins

Identifiers

PMID22996828
OpenAlexW2018879875

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.