ArticleScientific reports2012
Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii).
Article in Scientific reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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11 citing papers in PubMed.
- Evolutionary trends in the emergence of skeletal cell types.Evolution letters · 2025Article
- Phylogenomic Perspective on the Relationships and Evolutionary History of the Major Otocephalan Lineages.Scientific reports · 2018Article
- Evolution of Shh endoderm enhancers during morphological transition from ventral lungs to dorsal gas bladder.Nature communications · 2017Article
- Characterizing the transcriptome and molecular markers information for roach, Rutilus rutilus.Journal of genetics · 2016Article
- Whole Genome Sequencing of the Asian Arowana (Scleropages formosus) Provides Insights into the Evolution of Ray-Finned Fishes.Genome biology and evolution · 2015Article
- RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications.BMC evolutionary biology · 2015Article
- A comprehensive analysis of teleost MHC class I sequences.BMC evolutionary biology · 2015Article
- Fine mapping and evolution of the major sex determining region in turbot (Scophthalmus maximus).G3 (Bethesda, Md.) · 2014Article
- Article
- Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution.PLoS currents · 2013Article
- A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs).PloS one · 2013Article
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5 authors.
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Abstract
The actinopterygians comprise nearly one-half of all extant vertebrate species and are very important for human well-being. However, the phylogenetic relationships among certain groups within the actinopterygians are still uncertain, and debates about these relationships have continued for a long time. Along with the progress achieved in sequencing technologies, phylogenetic analyses based on multi-gene sequences, termed phylogenomic approaches, are becoming increasingly common and often result in well-resolved and highly supported phylogenetic hypotheses. Based on the transcriptome sequences generated in this study and the extensive expression data currently available from public databases, we obtained alignments of 274 orthologue groups for 26 scientifically and commercially important actinopterygians, representing 17 out of 44 orders within the class Actinopterygii. Using these alignments and probabilistic methods, we recovered relationships between basal actinopterygians and teleosts, among teleosts within protacanthopterygians and related lineages, and also within acanthomorphs. These relationships were recovered with high confidence.
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