Evidence map›Paper›PMID 22993212›Full record

ArticleMolecular biology of the cell2012

Yeast Irc6p is a novel type of conserved clathrin coat accessory factor related to small G proteins.

Sabine Gorynia, Todd C Lorenz, Giancarlo Costaguta, Lydia Daboussi, Duilio Cascio, Gregory S Payne

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Oligomer-to-monomer transition underlies the chaperone function of AAGAB in AP1/AP2 assembly.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sabine GoryniaDepartment of Biological Chemistry, School of Medicine, University of California at Los Angeles, Los Angeles, CA 90095, USA.
Todd C Lorenz
Giancarlo Costaguta
Lydia Daboussi
Duilio Cascio
Gregory S Payne

Funding

MOLECULAR STUDIES OF SELECTIVE PROTEIN TRANSPORTR01GM039040 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PAYNE, GREGORY S · 1988 to 2016
$6.4M
CSHL Meeting--Tyrosine Phosphorylation &cell SignallingR13CA091750 · NCI · COLD SPRING HARBOR LABORATORY · PI TONKS, NICHOLAS K · 2001 to 2005
$21k
NCI NIH HHS R13 CA091750NIGMS NIH HHS GM39040NIGMS NIH HHS R01 GM039040
6 · The paper itself

Abstract

Clathrin coat accessory proteins play key roles in transport mediated by clathrin-coated vesicles. Yeast Irc6p and the related mammalian p34 are putative clathrin accessory proteins that interact with clathrin adaptor complexes. We present evidence that Irc6p functions in clathrin-mediated traffic between the trans-Golgi network and endosomes, linking clathrin adaptor complex AP-1 and the Rab GTPase Ypt31p. The crystal structure of the Irc6p N-terminal domain revealed a G-protein fold most related to small G proteins of the Rab and Arf families. However, Irc6p lacks G-protein signature motifs and high-affinity GTP binding. Also, mutant Irc6p lacking candidate GTP-binding residues retained function. Mammalian p34 rescued growth defects in irc6 cells, indicating functional conservation, and modeling predicted a similar N-terminal fold in p34. Irc6p and p34 also contain functionally conserved C-terminal regions. Irc6p/p34-related proteins with the same two-part architecture are encoded in genomes of species as diverse as plants and humans. Together these results define Irc6p/p34 as a novel type of conserved clathrin accessory protein and founding members of a new G protein-like family.

Indexed as

Adaptor Proteins, Vesicular TransportADP-Ribosylation Factor 1Amino Acid SequenceBiological TransportClathrinConserved SequenceCrystallography, X-RayEndosomesMolecular Sequence DataMonomeric GTP-Binding ProteinsProtein Interaction MappingProtein Structure, Tertiaryrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSequence Alignmenttrans-Golgi NetworkAdaptor Proteins, Vesicular TransportADP-Ribosylation Factor 1ClathrinIrc6 protein, S cerevisiaeMonomeric GTP-Binding Proteinsrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsYPT31 protein, S cerevisiae

Identifiers

PMID22993212
PMCPMC3496615

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.