Evidence map›Paper›PMID 22992320›Full record

ArticleBMC genomics2012

Combinatorial control of temporal gene expression in the Drosophila wing by enhancers and core promoters.

David D O'Keefe, Sean R Thomas, Kelsey Bolin, Ellen Griggs, Bruce A Edgar, Laura A Buttitta

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Coupling between dynamic 3D tissue architecture and BMP morphogen signaling duringProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Making quantitative morphological variation from basic developmental processes: Where are we? The case of the Drosophila wing.Developmental dynamics : an official publication of the American Association of Anatomists · 2015
    Review
  11. Article
  12. Temporal regulation of Dpp signaling output in the Drosophila wing.Developmental dynamics : an official publication of the American Association of Anatomists · 2014
    Article
  13. Holo-TFIID controls the magnitude of a transcription burst and fine-tuning of transcription.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

David D O'KeefeDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Sean R Thomas
Kelsey Bolin
Ellen Griggs
Bruce A Edgar
Laura A Buttitta
University of Michigan–Ann Arbor · USFred Hutch Cancer Center · USGladstone Institutes · US

Funding

Research Education About Cancer and Health (REACH) CoreU54CA132381 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KAREN R PETERSON · 2007 to 2026
$25.3M
Undergraduate Student Training in Cancer ResearchU54CA132383 · NCI · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI MICHELE Irene SHUSTER · 2007 to 2026
$21.4M
Developmental control of cell cycle exitR01GM070887 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BREEDEN, LINDA L. · 2006 to 2009
$1.1M
Mechanisms controlling cell cycle exit upon terminal differentiationR00GM086517 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BUTTITTA, LAURA A · 2011 to 2013
$710k
Mechanisms controlling cell cycle exit upon terminal differentiationK99GM086517 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BUTTITTA, LAURA A · 2009 to 2010
$180k
NCI NIH HHS 1U54CA132381NCI NIH HHS U54 CA132381NCI NIH HHS U54 CA132383NIGMS NIH HHS GM070887NIGMS NIH HHS GM086517NIGMS NIH HHS K99 GM086517NIGMS NIH HHS R00 GM086517
6 · The paper itself

Abstract

backgroundThe transformation of a developing epithelium into an adult structure is a complex process, which often involves coordinated changes in cell proliferation, metabolism, adhesion, and shape. To identify genetic mechanisms that control epithelial differentiation, we analyzed the temporal patterns of gene expression during metamorphosis of the Drosophila wing.

resultsWe found that a striking number of genes, approximately 50% of the Drosophila transcriptome, exhibited changes in expression during a time course of wing development. While cis-acting enhancer sequences clearly correlated with these changes, a stronger correlation was discovered between core-promoter types and the dynamic patterns of gene expression within this differentiating tissue. In support of the hypothesis that core-promoter type influences the dynamics of expression, expression levels of several TATA-box binding protein associated factors (TAFs) and other core promoter-associated components changed during this developmental time course, and a testes-specific TAF (tTAF) played a critical role in timing cellular differentiation within the wing.

conclusionsOur results suggest that the combinatorial control of gene expression via cis-acting enhancer sequences and core-promoter types, determine the complex changes in gene expression that drive morphogenesis and terminal differentiation of the Drosophila wing epithelium.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, DevelopmentalPromoter Regions, GeneticAnimalsCell AdhesionCell DifferentiationCell ProliferationDrosophila melanogasterDrosophila ProteinsGene ExpressionMorphogenesisRNA InterferenceRNA, Small InterferingTATA Box Binding Protein-Like ProteinsTranscriptomeWings, AnimalDrosophila ProteinsRNA, Small InterferingTATA Box Binding Protein-Like Proteins

Identifiers

PMID22992320
PMCPMC3641971
OpenAlexW2049134459

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.