Evidence map›Paper›PMID 22992183›Full record

ArticleJournal of the American Chemical Society2012

Femtosecond conical intersection dynamics of tryptophan in proteins and validation of slowdown of hydration layer dynamics.

Jin Yang, Luyuan Zhang, Lijuan Wang, Dongping Zhong

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Dynamics and mechanism of ultrafast water-protein interactions.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jin YangDepartment of Physics, and Program of Biophysics, The Ohio State University, Columbus, Ohio 43210, USA.
Luyuan Zhang
Lijuan Wang
Dongping Zhong

Funding

Dynamics and Mechanism of Water-Protein InteractionsR01GM095997 · NIGMS · OHIO STATE UNIVERSITY · PI ZHONG, DONGPING · 2011 to 2014
$1.1M
NIGMS NIH HHS GM095997NIGMS NIH HHS R01 GM095997
6 · The paper itself

Abstract

Water motion probed by intrinsic tryptophan shows the significant slowdown around protein surfaces, but it is unknown how the ultrafast internal conversion of two nearly degenerate states of Trp ((1)L(a) and (1)L(b)) affects the initial hydration in proteins. Here, we used a mini-protein with 10 different tryptophan locations one at a time through site-directed mutagenesis and extensively characterized the conversion dynamics of the two states. We observed all the conversion time scales in 40-80 fs by measurement of their anisotropy dynamics. This result is significant and shows no noticeable effect on the initial observed hydration dynamics and unambiguously validates the slowdown of hydration layer dynamics as shown here again in two mutant proteins.

Indexed as

Molecular Dynamics SimulationBacterial ProteinsMutagenesis, Site-DirectedProteinsStreptococcusTryptophanWaterBacterial ProteinsIgG Fc-binding protein, StreptococcusProteinsTryptophanWater

Identifiers

PMID22992183
PMCPMC3468670

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.