Evidence map›Paper›PMID 22991471›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Heterogeneous nuclear ribonucleoprotein L-like (hnRNPLL) and elongation factor, RNA polymerase II, 2 (ELL2) are regulators of mRNA processing in plasma cells.

Micah J Benson, Tarmo Aijö, Xing Chang, John Gagnon, Utz J Pape, Vivek Anantharaman, L Aravind, Juha-Pekka Pursiheimo, Shalini Oberdoerffer, X Shirley Liu and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

  1. Pooled it
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  9. Observational
  10. Genetic Regulation of Immunoglobulin G Glycosylation.Experientia supplementum (2012) · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 2 countries.

Micah J BensonDepartment of Pathology, Harvard Medical School and Immune Disease Institute and Program in Cellular and Molecular Medicine, Children's Hospital Boston, Boston, MA 02115, USA.
Tarmo Aijö
Xing Chang
John Gagnon
Utz J Pape
Vivek Anantharaman
L Aravind
Juha-Pekka Pursiheimo
Shalini Oberdoerffer
X Shirley Liu
Riitta Lahesmaa
Harri Lähdesmäki
Anjana Rao
Harvard University · USNational Institutes of Health · USAalto University · FIÅbo Akademi University · FIBoston Children's Hospital · USLa Jolla Institute for Immunology · USNational Cancer Institute · USTurku Centre for Biotechnology · FIUniversity of Turku · FI

Funding

Evolutionary Analysis and Comparative Genomics of Protein SuperfamiliesZIALM594244 · NLM · NATIONAL LIBRARY OF MEDICINE · PI ARAVIND, L · 2009 to 2025
$20.3M
SIGNAL TRANSDUCTION AND GENE INDUCTION IN T LYMPHOCYTESR01AI040127 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI HOGAN, PATRICK, RAO, ANJANA · 1996 to 2025
$13.3M
TRANSFUSION BIOLOGY AND MEDICINET32HL066987 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI JOHN P MANIS · 2001 to 2026
$10.2M
Computational Models for Mechanisms of Global Transcription RegulationR01HG004069 · NHGRI · DANA-FARBER CANCER INST · PI LIU, XIAOLE SHIRLEY · 2006 to 2013
$3.6M
BZIP PROTEINS AND LYMPHOCYTE GENE INDUCTIONR37CA042471 · NCI · IMMUNE DISEASE INSTITUTE, INC. · PI RAO, ANJANA · 1999 to 2006
$3.6M
ROLE OF THE FOS ONCOGENE IN LYMPHOCYTE GROWTHR01CA042471 · NCI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI RAO, ANJANA · 1986 to 2012
$3.1M
Regulation of CD45 alternative splicing by HNRPLLR01AI080875 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI RAO, ANJANA · 2009 to 2013
$2.3M
NCI NIH HHS CA424741NCI NIH HHS R01 CA042471NCI NIH HHS R37 CA042471NHGRI NIH HHS HG4069NHGRI NIH HHS R01 HG004069NHLBI NIH HHS T32 HL066987NIAID NIH HHS AI080875NIAID NIH HHS AI40127NIAID NIH HHS R01 AI040127NIAID NIH HHS R01 AI080875
6 · The paper itself

Abstract

B cells and plasma cells possess distinct RNA processing environments that respectively promote the expression of membrane-associated Ig by B cells versus the secretion of Ig by plasma cells. Through a combination of transcriptional profiling and screening using a lentiviral short-hairpin RNA interference library, we show that both the splicing factor hnRNPLL and the transcription elongation factor ELL2 modulate the ratio of secreted versus membrane-encoding Ighg2b transcripts in MPC11 plasmacytoma cell lines. hnRNPLL and ELL2 are both highly expressed in primary plasma cells relative to B cells, but hnRNPLL binds Ighg2b mRNA transcripts and promotes an increase in levels of the membrane-encoding Ighg2b isoform at the expense of the secreted Ighg2b isoform, whereas ELL2 counteracts this effect and drives Ig secretion by increasing the frequency of the secreted Ighg2b isoform. As in T cells, hnRNPLL also alters the splicing pattern of mRNA encoding the adhesion receptor CD44, promoting exon inclusion, and decreasing the overall level of CD44 expression. Further characterization of ELL2-dependent transcription by RNA-Seq revealed that ∼12% of transcripts expressed by plasma cells were differentially processed because of the activities of ELL2, including B-cell maturation antigen BCMA, a receptor with a defined role in plasma cell survival. Taken together, our data identify hnRNPLL and ELL2 as regulators of pre-mRNA processing in plasma cells.

Indexed as

AnimalsBlotting, WesternCell Line, TumorFlow CytometryHeterogeneous-Nuclear RibonucleoproteinsHyaluronan ReceptorsImmunoglobulin Heavy ChainsImmunoprecipitationMiceMice, Inbred BALB CMicroarray AnalysisPlasma CellsProtein IsoformsReal-Time Polymerase Chain ReactionRNA, MessengerSequence Analysis, RNAELL2 protein, mouseHeterogeneous-Nuclear RibonucleoproteinshnRNPLL protein, mouseHyaluronan ReceptorsImmunoglobulin Heavy ChainsProtein IsoformsRNA, MessengerTranscriptional Elongation Factors

Identifiers

PMID22991471
PMCPMC3479602
OpenAlexW1968395373

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.