Evidence map›Paper›PMID 22991467›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Staphylococcal pathogenicity island interference with helper phage reproduction is a paradigm of molecular parasitism.

Geeta Ram, John Chen, Krishan Kumar, Hope F Ross, Carles Ubeda, Priyadarshan K Damle, Kristin D Lane, José R Penadés, Gail E Christie, Richard P Novick

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 130 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Genetics, ecology and evolution of phage satellites.Nature reviews. Microbiology · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Open questions in the social lives of viruses.Journal of evolutionary biology · 2023
    Review
  13. Article
  14. Review
  15. Review
  16. Atopic dermatitis-derivedFrontiers in cellular and infection microbiology · 2023
    Article
  17. Marine viral particles reveal an expansive repertoire of phage-parasitizing mobile elements.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Article
  19. Review
  20. Phascinating Phages.Microorganisms · 2022
    Review

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Geeta RamSkirball Institute Program in Molecular Pathogenesis and Department of Microbiology, New York University Medical Center, New York, NY 10016, USA.
John Chen
Krishan Kumar
Hope F Ross
Carles Ubeda
Priyadarshan K Damle
Kristin D Lane
José R Penadés
Gail E Christie
Richard P Novick
New York University · USVirginia Commonwealth University · USUniversity Medical Center · USConsejo Superior de Investigaciones Científicas · ES

Funding

Molecular Biology of TSST-1 and other superantigen toxinsR01AI022159 · NIAID · PUBLIC HEALTH RESEARCH INSTITUTE · PI NOVICK, RICHARD P. · 1985 to 2014
$2.6M
Helper Phage Mobilization of Staphylococcal Enterotoxin GenesR21AI067654 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI CHRISTIE, GAIL E · 2006 to 2007
$399k
Helper phage mobilization of S. aureus superantigen pathogenicity islandsR56AI081837 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI CHRISTIE, GAIL E · 2010 to 2010
$372k
NIAID NIH HHS R01AI02215NIAID NIH HHS R01 AI022159NIAID NIH HHS R21 AI067654NIAID NIH HHS R56 AI081837
6 · The paper itself

Abstract

Staphylococcal pathogenicity islands (SaPIs) carry superantigen and resistance genes and are extremely widespread in Staphylococcus aureus and in other Gram-positive bacteria. SaPIs represent a major source of intrageneric horizontal gene transfer and a stealth conduit for intergeneric gene transfer; they are phage satellites that exploit the life cycle of their temperate helper phages with elegant precision to enable their rapid replication and promiscuous spread. SaPIs also interfere with helper phage reproduction, blocking plaque formation, sharply reducing burst size and enhancing the survival of host cells following phage infection. Here, we show that SaPIs use several different strategies for phage interference, presumably the result of convergent evolution. One strategy, not described previously in the bacteriophage microcosm, involves a SaPI-encoded protein that directly and specifically interferes with phage DNA packaging by blocking the phage terminase small subunit. Another strategy involves interference with phage reproduction by diversion of the vast majority of virion proteins to the formation of SaPI-specific small infectious particles. Several SaPIs use both of these strategies, and at least one uses neither but possesses a third. Our studies illuminate a key feature of the evolutionary strategy of these mobile genetic elements, in addition to their carriage of important genes-interference with helper phage reproduction, which could ensure their transferability and long-term persistence.

Indexed as

AntibiosisCloning, MolecularEscherichia coliGene Transfer, HorizontalGenomic IslandsMicroscopy, ElectronReal-Time Polymerase Chain ReactionStaphylococcus aureusStaphylococcus PhagesTwo-Hybrid System TechniquesViral Plaque AssayVirus Replication

Identifiers

PMID22991467
PMCPMC3479557
OpenAlexW1985164462

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.