Evidence map›Paper›PMID 22991087›Full record

ReviewMammalian genome : official journal of the International Mammalian Genome Society2012

High throughput sequencing approaches to mutation discovery in the mouse.

Michelle M Simon, Ann-Marie Mallon, Gareth R Howell, Laura G Reinholdt

Abstract readReview
In one paragraph

Review in Mammalian genome : official journal of the International Mammalian Genome Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Mice with a Brd4 Mutation Represent a New Model of Nephrocalcinosis.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2019
    Article
  3. An N-Ethyl-N-Nitrosourea (ENU)-Induced Tyr265Stop Mutation of the DNA Polymerase Accessory Subunit Gamma 2 (Polg2) Is Associated With Renal Calcification in Mice.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2019
    Article
  4. Current strategies for mutation detection in phenotype-driven screens utilising next generation sequencing.Mammalian genome : official journal of the International Mammalian Genome Society · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Michelle M SimonMRC Harwell, Harwell Science and Innovation Campus, Oxfordshire OX11 0RD, UK. m.simon@har.mrc.ac.uk
Ann-Marie Mallon
Gareth R Howell
Laura G Reinholdt
Jackson Laboratory · USMary Lyon Centre at MRC Harwell · GB

Funding

Mouse Mutant ResourceP40OD010972 · OD · JACKSON LABORATORY · PI BERGSTROM, DAVID ERIC, REINHOLDT, LAURA G · 2012 to 2015
$3.4M
Medical Research Council MC_U142684171NIH HHS P40 OD010972
6 · The paper itself

Abstract

Phenotype-driven approaches in mice are powerful strategies for the discovery of genes and gene functions and for unravelling complex biological mechanisms. Traditional methods for mutation discovery are reliable and robust, but they can also be laborious and time consuming. Recently, high-throughput sequencing (HTS) technologies have revolutionised the process of forward genetics in mice by paving the way to rapid mutation discovery. However, successful application of HTS for mutation discovery relies heavily on the sequencing approach employed and strategies for data analysis. Here we review current HTS applications and resources for mutation discovery and provide an overview of the practical considerations for HTS implementation and data analysis.

Indexed as

MutationAnimalsHigh-Throughput Screening AssaysMiceTranscriptome

Identifiers

PMID22991087
PMCPMC3724459
OpenAlexW2091826441

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.