Evidence map›Paper›PMID 22990673›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2012

AAV vectors containing rDNA homology display increased chromosomal integration and transgene persistence.

Zhongya Wang, Leszek Lisowski, Milton J Finegold, Hiroyuki Nakai, Mark A Kay, Markus Grompe

Open access · hybridAbstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. International journal of molecular sciences · 2023
    Article
  9. Review
  10. Review
  11. Strategies to improve safety profile of AAV vectors.Frontiers in molecular medicine · 2022
    Review
  12. AAV integration in human hepatocytes.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Article
  13. The intersection of vector biology, gene therapy, and hemophilia.Research and practice in thrombosis and haemostasis · 2021
    Review
  14. Evaluating the Genomic Parameters Governing rAAV-Mediated Homologous Recombination.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Article
  15. Efficient Nuclease-Directed Integration of Lentivirus Vectors into the Human Ribosomal DNA Locus.Molecular therapy : the journal of the American Society of Gene Therapy · 2020
    Article
  16. Article
  17. Article
  18. Emerging Issues in AAV-MediatedMolecular therapy. Methods & clinical development · 2018
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Zhongya WangOregon Stem Cell Center, Papé Family Pediatric Research Institute, Oregon Health and Science University, Portland, Oregon 97239-3098, USA.
Leszek Lisowski
Milton J Finegold
Hiroyuki Nakai
Mark A Kay
Markus Grompe
Oregon Health & Science University · USStanford University · USTexas Children's Hospital · US

Funding

Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Geoffrey A Preidis · 2001 to 2026
$28.3M
HEPATIC GENE TRANSFER FOR TREATMENT OF HEMOPHILIAS A &BR01HL064274 · NHLBI · STANFORD UNIVERSITY · PI Mark A Kay · 2000 to 2026
$13.6M
Treatment of Distal Tyrosine Pathway DisordersR01DK048252 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI GROMPE, MARKUS · 1994 to 2017
$5.5M
Vector and Host Cellular Biology in AAV Vector Transduction in VivoR01DK078388 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NAKAI, HIROYUKI · 2008 to 2012
$1.4M
Vector and host cellular biology in AAV vector transduction in vivoR56DK078388 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NAKAI, HIROYUKI · 2007 to 2007
$111k
NHLBI NIH HHS HL064274NHLBI NIH HHS R01 HL064274NIDDK NIH HHS DK 78388NIDDK NIH HHS P30 DK056338NIDDK NIH HHS R01 DK048252NIDDK NIH HHS R01 DK078388NIDDK NIH HHS R01-DK48252NIDDK NIH HHS R56 DK078388
6 · The paper itself

Abstract

Although recombinant adeno-associated viral (rAAV) vectors are promising tools for gene therapy of genetic disorders, they remain mostly episomal and hence are lost during cell replication. For this reason, rAAV vectors capable of chromosomal integration would be desirable. Ribosomal DNA (rDNA) repeat sequences are overrepresented during random integration of rAAV. We therefore sought to enhance AAV integration frequency by including 28S rDNA homology arms into our vector design. A vector containing ~1 kb of homology on each side of a cDNA expression cassette for human fumarylacetoacetate hydrolase (FAH) was constructed. rAAV of serotypes 2 and 8 were injected into Fah-deficient mice, a model for human tyrosinemia type 1. Integrated FAH transgenes are positively selected in this model and rDNA-containing AAV vectors had a ~30× higher integration frequency than controls. Integration by homologous recombination (HR) into the 28S rDNA locus was seen in multiple tissues. Furthermore, rDNA-containing AAV vectors for human factor IX (hFIX) demonstrated increased transgene persistence after liver regeneration. We conclude that rDNA containing AAV vectors may be superior to conventional vector design for the treatment of genetic diseases, especially those associated with increased hepatocyte replication.

Indexed as

Virus IntegrationAmino Acid SequenceAnimalsDependovirusDNA, RibosomalDNA, ViralFactor IXGene ExpressionGenetic TherapyGenetic VectorsGene Transfer TechniquesHepatocytesHumansLiverMaleMiceDNA, RibosomalDNA, ViralFactor IX

Identifiers

PMID22990673
PMCPMC3464636
OpenAlexW2169739298

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.