Evidence map›Paper›PMID 22988248›Full record

ArticleThe Journal of biological chemistry2012

Versatile high resolution oligosaccharide microarrays for plant glycobiology and cell wall research.

Henriette L Pedersen, Jonatan U Fangel, Barry McCleary, Christian Ruzanski, Maja G Rydahl, Marie-Christine Ralet, Vladimir Farkas, Laura von Schantz, Susan E Marcus, Mathias C F Andersen and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 143 papers.

0numbers the graph read from it
0cells of the map it votes in
143citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

143 citing papers in PubMed, 259 citations in OpenAlex.

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  16. Analysis of Pectins, Extensins, and Hemicelluloses in Abscission Zones.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  17. Article
  18. Article
  19. Cell Wall Profiling of the Resurrection PlantsPlants (Basel, Switzerland) · 2024
    Article
  20. Article

83 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 5 countries.

Henriette L PedersenDepartment of Plant Biology and Biotechnology, University of Copenhagen, 1871 Frederiksberg, Denmark.
Jonatan U Fangel
Barry McCleary
Christian Ruzanski
Maja G Rydahl
Marie-Christine Ralet
Vladimir Farkas
Laura von Schantz
Susan E Marcus
Mathias C F Andersen
Rob Field
Mats Ohlin
J Paul Knox
Mads H Clausen
William G T Willats
University of Copenhagen · DKJohn Innes Centre · GBLund University · SETechnical University of Denmark · DKUniversity of Leeds · GBInstitut National de la Recherche Agronomique · MASlovak Academy of Sciences · SK

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/000C0618
6 · The paper itself

Abstract

Microarrays are powerful tools for high throughput analysis, and hundreds or thousands of molecular interactions can be assessed simultaneously using very small amounts of analytes. Nucleotide microarrays are well established in plant research, but carbohydrate microarrays are much less established, and one reason for this is a lack of suitable glycans with which to populate arrays. Polysaccharide microarrays are relatively easy to produce because of the ease of immobilizing large polymers noncovalently onto a variety of microarray surfaces, but they lack analytical resolution because polysaccharides often contain multiple distinct carbohydrate substructures. Microarrays of defined oligosaccharides potentially overcome this problem but are harder to produce because oligosaccharides usually require coupling prior to immobilization. We have assembled a library of well characterized plant oligosaccharides produced either by partial hydrolysis from polysaccharides or by de novo chemical synthesis. Once coupled to protein, these neoglycoconjugates are versatile reagents that can be printed as microarrays onto a variety of slide types and membranes. We show that these microarrays are suitable for the high throughput characterization of the recognition capabilities of monoclonal antibodies, carbohydrate-binding modules, and other oligosaccharide-binding proteins of biological significance and also that they have potential for the characterization of carbohydrate-active enzymes.

Indexed as

Cell WallMicroarray AnalysisPlantsPolysaccharidesPolysaccharides

Identifiers

PMID22988248
PMCPMC3501085
OpenAlexW1991602629

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.