Evidence map›Paper›PMID 22988113›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Strain-dependent diversity in the Pseudomonas aeruginosa quorum-sensing regulon.

Sudha Chugani, Byoung Sik Kim, Somsak Phattarasukol, Mitchell J Brittnacher, Sang Ho Choi, Caroline S Harwood, E Peter Greenberg

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed.

  1. Article
  2. Article
  3. The anti-inflammatory drug celecoxib is metabolized by Pseudomonas aeruginosa CYP107S1 in vitro and in vivo.Drug metabolism and disposition: the biological fate of chemicals · 2025
    Article
  4. Article
  5. Modulation of themBio · 2025
    Article
  6. Article
  7. The relationship betweenJournal of bacteriology · 2024
    Article
  8. Article
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  13. Article
  14. ModifiedFrontiers in molecular biosciences · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sudha ChuganiDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA.
Byoung Sik Kim
Somsak Phattarasukol
Mitchell J Brittnacher
Sang Ho Choi
Caroline S Harwood
E Peter Greenberg

Funding

Variation in Human Innate ImmunityU54AI057141 · NIAID · UNIVERSITY OF WASHINGTON · PI COOKSON, BRAD T · 2003 to 2013
$102.3M
Translational Research Center to Expedite Novel Therapies in Cystic FibrosisP30DK089507 · NIDDK · SEATTLE CHILDREN'S HOSPITAL · PI Christopher Hooper Goss, Lucas R Hoffman · 2010 to 2026
$21.4M
QUORUM SENSING IN PSEUDOMONAS AERUGINOSAR01GM059026 · NIGMS · UNIVERSITY OF WASHINGTON · PI GREENBERG, EVERETT P · 1999 to 2019
$6.5M
Pseudomonas aeruginosa sensing and responseR01GM056665 · NIGMS · UNIVERSITY OF WASHINGTON · PI HARWOOD, CAROLINE STONE · 1998 to 2011
$3.0M
NIAID NIH HHS U54 AI057141NIDDK NIH HHS P30 DK089507NIDDK NIH HHS P30DK089507NIGMS NIH HHS GM-56665NIGMS NIH HHS GM-59026NIGMS NIH HHS R01 GM056665NIGMS NIH HHS R01 GM059026
6 · The paper itself

Abstract

Quorum sensing allows bacteria to sense and respond to changes in population density. Acyl-homoserine lactones serve as quorum-sensing signals for many Proteobacteria, and acyl-homoserine lactone signaling is known to control cooperative activities. Quorum-controlled activities vary from one species to another. Quorum-sensing controls a constellation of genes in the opportunistic pathogen Pseudomonas aeruginosa, which thrives in a number of habitats ranging from soil and water to animal hosts. We hypothesized that there would be significant variation in quorum-sensing regulons among strains of P. aeruginosa isolated from different habitats and that differences in the quorum-sensing regulons might reveal insights about the ecology of P. aeruginosa. As a test of our hypothesis we used RNA-seq to identify quorum-controlled genes in seven P. aeruginosa isolates of diverse origins. Although our approach certainly overlooks some quorum-sensing-regulated genes we found a shared set of genes, i.e., a core quorum-controlled gene set, and we identified distinct, strain-variable sets of quorum-controlled genes, i.e., accessory genes. Some quorum-controlled genes in some strains were not present in the genomes of other strains. We detected a correlation between traits encoded by some genes in the strain-variable subsets of the quorum regulons and the ecology of the isolates. These findings indicate a role for quorum sensing in extension of the range of habitats in which a species can thrive. This study also provides a framework for understanding the molecular mechanisms by which quorum-sensing systems operate, the evolutionary pressures by which they are maintained, and their importance in disparate ecological contexts.

Indexed as

Genetic VariationRegulonCluster AnalysisCystic FibrosisEnvironmental MicrobiologyGene Expression ProfilingGene Expression Regulation, BacterialGenes, BacterialGenome, BacterialHumansMolecular Sequence DataMutationOligonucleotide Array Sequence AnalysisPseudomonas aeruginosaPseudomonas InfectionsQuorum Sensing

Identifiers

PMID22988113
PMCPMC3478653

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.