Evidence map›Paper›PMID 22988090›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Integration of stress-related and reactive oxygen species-mediated signals by Topoisomerase VI in Arabidopsis thaliana.

Klára Simková, Fanny Moreau, Piotr Pawlak, Cécile Vriet, Aiswarya Baruah, Cristina Alexandre, Lars Hennig, Klaus Apel, Christophe Laloi

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Topoisomerase VI participates in an insulator-like function that prevents H3K9me2 spreading.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Review
  11. Article
  12. DNA topoisomerases: Advances in understanding of cellular roles and multi-protein complexes via structure-function analysis.BioEssays : news and reviews in molecular, cellular and developmental biology · 2021
    Review
  13. Redox Components: Key Regulators of Epigenetic Modifications in Plants.International journal of molecular sciences · 2020
    Review
  14. Article
  15. Oxygen and ROS in Photosynthesis.Plants (Basel, Switzerland) · 2020
    Review
  16. Plant Chromatin Catches the Sun.Frontiers in plant science · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Klára SimkováDepartment of Biology, Zurich-Basel Plant Science Center, Eidgenössiche Technische Hochschule Zurich, CH-8092 Zurich, Switzerland.
Fanny Moreau
Piotr Pawlak
Cécile Vriet
Aiswarya Baruah
Cristina Alexandre
Lars Hennig
Klaus Apel
Christophe Laloi
Aix-Marseille Université · FRCentre National de la Recherche Scientifique · FRCornell University · USIthaca College · USSwedish University of Agricultural Sciences · SE

Funding

The genetic basis of singlet oxygen-mediated signaling in eukaryotic cellsR01GM085036 · NIGMS · BOYCE THOMPSON INST FOR PLANT RESEARCH · PI APEL, KLAUS · 2010 to 2013
$991k
NIGMS NIH HHS R01 GM085036
6 · The paper itself

Abstract

Environmental stress often leads to an increased production of reactive oxygen species that are involved in plastid-to-nucleus retrograde signaling. Soon after the release of singlet oxygen ((1)O(2)) in chloroplasts of the flu mutant of Arabidopsis, reprogramming of nuclear gene expression reveals a rapid transfer of signals from the plastid to the nucleus. We have identified extraplastidic signaling constituents involved in (1)O(2)-initiated plastid-to-nucleus signaling and nuclear gene activation after mutagenizing a flu line expressing the luciferase reporter gene under the control of the promoter of a (1)O(2)-responsive AAA-ATPase gene (At3g28580) and isolating second-site mutations that lead to a constitutive up-regulation of the reporter gene or abrogate its (1)O(2)-dependent up-regulation. One of these mutants, caa39, turned out to be a weak mutant allele of the Topoisomerase VI (Topo VI) A-subunit gene with a single amino acid substitution. Transcript profile analysis of flu and flu caa39 mutants revealed that Topo VI is necessary for the full activation of AAA-ATPase and a set of (1)O(2)-responsive transcripts in response to (1)O(2). Topo VI binds to the promoter of the AAA-ATPase and other (1)O(2)-responsive genes, and hence could directly regulate their expression. Under photoinhibitory stress conditions, which enhance the production of (1)O(2) and H(2)O(2), Topo VI regulates (1)O(2)-responsive and H(2)O(2)-responsive genes in a distinct manner. These results suggest that Topo VI acts as an integrator of multiple signals generated by reactive oxygen species formed in plants under adverse environmental conditions.

Indexed as

ArabidopsisArabidopsis ProteinsArchaeal ProteinsCell NucleusChromatin ImmunoprecipitationDNA Topoisomerases, Type IIGene Expression ProfilingGene Expression Regulation, PlantLuciferasesMicroarray AnalysisMutationPlastidsReactive Oxygen SpeciesReal-Time Polymerase Chain ReactionSignal TransductionSinglet OxygenArabidopsis ProteinsArchaeal ProteinsDNA Topoisomerases, Type IIDNA topoisomerase VIFLU protein, ArabidopsisLuciferasesReactive Oxygen SpeciesSinglet Oxygen

Identifiers

PMID22988090
PMCPMC3479551
OpenAlexW2082085806

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.