Evidence map›Paper›PMID 22986689›Full record

ArticleJournal of biomolecular NMR2012

Solid-state NMR analysis of membrane proteins and protein aggregates by proton detected spectroscopy.

Donghua H Zhou, Andrew J Nieuwkoop, Deborah A Berthold, Gemma Comellas, Lindsay J Sperling, Ming Tang, Gautam J Shah, Elliott J Brea, Luisel R Lemkau, Chad M Rienstra

Abstract read
In one paragraph

Article in Journal of biomolecular NMR, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Cross polarization stability in multidimensional NMR spectroscopy of biological solids.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2024
    Article
  6. Homonuclear Simplified Preservation of Equivalent Pathways Spectroscopy.The journal of physical chemistry letters · 2024
    Article
  7. Article
  8. Journal of biomolecular NMR · 2023
    Article
  9. Great Offset Difference Internuclear Selective Transfer.The journal of physical chemistry letters · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Heteronuclear and homonuclear radio-frequency-driven recoupling.Magnetic resonance (Gottingen, Germany) · 2021
    Article
  17. Review
  18. Review
  19. Review
  20. Review

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Donghua H ZhouDepartment of Physics, Oklahoma State University, Stillwater, OK 74074, USA. donghua@okstate.edu
Andrew J Nieuwkoop
Deborah A Berthold
Gemma Comellas
Lindsay J Sperling
Ming Tang
Gautam J Shah
Elliott J Brea
Luisel R Lemkau
Chad M Rienstra

Funding

Structures of Protein Aggregates by Solid-State NMRR01GM073770 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RIENSTRA, CHAD M · 2007 to 2014
$2.6M
Structure and Function of Membrane Protein Complexes(RMI)R01GM075937 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI RIENSTRA, CHAD M · 2005 to 2009
$1.4M
Structural Investigation of Lipid Storage Protein by Solid-State NMRR15GM097713 · NIGMS · OKLAHOMA STATE UNIVERSITY STILLWATER · PI ZHOU, DONGHUA HOWARD · 2011 to 2011
$337k
NIGMS NIH HHS R01 GM073770NIGMS NIH HHS R01 GM075937NIGMS NIH HHS R01 GM-73770NIGMS NIH HHS R01 GM-75937NIGMS NIH HHS R15 GM-097713NIGMS NIH HHS R15 GM097713
6 · The paper itself

Abstract

Solid-state NMR has emerged as an important tool for structural biology and chemistry, capable of solving atomic-resolution structures for proteins in membrane-bound and aggregated states. Proton detection methods have been recently realized under fast magic-angle spinning conditions, providing large sensitivity enhancements for efficient examination of uniformly labeled proteins. The first and often most challenging step of protein structure determination by NMR is the site-specific resonance assignment. Here we demonstrate resonance assignments based on high-sensitivity proton-detected three-dimensional experiments for samples of different physical states, including a fully-protonated small protein (GB1, 6 kDa), a deuterated microcrystalline protein (DsbA, 21 kDa), a membrane protein (DsbB, 20 kDa) prepared in a lipid environment, and the extended core of a fibrillar protein (α-synuclein, 14 kDa). In our implementation of these experiments, including CONH, CO(CA)NH, CANH, CA(CO)NH, CBCANH, and CBCA(CO)NH, dipolar-based polarization transfer methods have been chosen for optimal efficiency for relatively high protonation levels (full protonation or 100 % amide proton), fast magic-angle spinning conditions (40 kHz) and moderate proton decoupling power levels. Each H-N pair correlates exclusively to either intra- or inter-residue carbons, but not both, to maximize spectral resolution. Experiment time can be reduced by at least a factor of 10 by using proton detection in comparison to carbon detection. These high-sensitivity experiments are especially important for membrane proteins, which often have rather low expression yield. Proton-detection based experiments are expected to play an important role in accelerating protein structure elucidation by solid-state NMR with the improved sensitivity and resolution.

Indexed as

alpha-SynucleinBacterial ProteinsDeuteriumEscherichia coli ProteinsMembrane ProteinsNuclear Magnetic Resonance, BiomolecularProtein Disulfide-IsomerasesProtonsalpha-SynucleinBacterial ProteinsDeuteriumdsbA protein, E coliDsbB protein, BacteriaEscherichia coli ProteinsMembrane ProteinsProtein Disulfide-IsomerasesProtons

Identifiers

PMID22986689
PMCPMC3484199

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.