Evidence map›Paper›PMID 22986438›Full record

ArticleThe American journal of gastroenterology2012

Quantitative profiling of gut microbiota of children with diarrhea-predominant irritable bowel syndrome.

Laura Rigsbee, Richard Agans, Vijay Shankar, Harshavardhan Kenche, Harry J Khamis, Sonia Michail, Oleg Paliy

Registry-linked trialAbstract read
PubMed Publisher
In one paragraph

Article in The American journal of gastroenterology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06668922 (Fecal Bile Acids, Fecal Short Chain Fatty Acids and the Intestinal Microbiota in Patients With Irritable Bowel Syndrome), which is not on this map. Cited by 96 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed, 1 pooled it
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06668922 narecruitingnot on this mapstarted 2024, after this paper: background citation

Fecal Bile Acids, Fecal Short Chain Fatty Acids and the Intestinal Microbiota in Patients With Irritable Bowel Syndrome (IBS) and Control Volunteers: Diet Challenge

TypeinterventionalSponsorUniversity of California, Los AngelesRan2024 to 2030Enrolled72ConditionsIrritable Bowel Syndrome (IBS)ArmsInulin
3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 1 synthesis or guideline pooled it, 210 citations in OpenAlex.

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  15. The biofunction ofMicrobiome research reports · 2024
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36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Laura RigsbeeDepartment of Biochemistry and Molecular Biology, Wright State University, Dayton, Ohio, USA.
Richard Agans
Vijay Shankar
Harshavardhan Kenche
Harry J Khamis
Sonia Michail
Oleg Paliy
Wright State University · US

Funding

The Use of VSL#3 in Irritable Bowel Syndrome in ChildrenR21AT003400 · NCCIH · WRIGHT STATE UNIVERSITY · PI MICHAIL, SONIA · 2008 to 2011
$545k
Using Affymetrix Microflora array to study microflora composition in children witR21AT003423 · NCCIH · WRIGHT STATE UNIVERSITY · PI PALIY, OLEG · 2008 to 2009
$395k
Quantitative measurements of intestinal metabolites in healthy and IBS childrenR03HD065575 · NICHD · WRIGHT STATE UNIVERSITY · PI PALIY, OLEG · 2010 to 2011
$143k
NCCIH NIH HHS AT003400NCCIH NIH HHS AT003423NICHD NIH HHS HD065575
6 · The paper itself

Abstract

objectivesHuman intestinal microbiota has a number of important roles in human health and is also implicated in several gastrointestinal disorders. The goal of this study was to determine the gut microbiota in two groups of pre- and adolescent children: healthy volunteers and children diagnosed with diarrhea predominant irritable bowel syndrome (IBS-D).

methodsPhylogenetic Microbiota Array was used to obtain quantitative measurements of bacterial presence and abundance in subjects ’ fecal samples. We utilized high-throughput DNA sequencing, quantitative PCR, and fluorescent in situ hybridization to confirm microarray findings.

resultsBoth sample groups were dominated by the phyla Firmicutes, Bacteroidetes, and Actinobacteria, which cumulatively constituted 91 % of overall sample composition on average. A core microbiome shared among analyzed samples encompassed 55 bacterial phylotypes dominated by genus Ruminococcus ; members of genera Clostridium , Faecalibacterium, Roseburia, Streptococcus , and Bacteroides were also present. Several genera were found to be differentially abundant in the gut of healthy and IBS groups: levels of Veillonella , Prevotella , Lactobacillus , and Parasporo bacterium were increased in children diagnosed with IBS, whereas members of Bifidobacterium and Verrucomicrobium were less abundant in those individuals. By calculating a nonparametric correlation matrix among abundances of different genera in all samples, we also examined potential associations among intestinal microbes. Strong positive correlations were found between abundances of Veillonella and both Haemophilus and Streptococcus , between Anaerovorax and Verrucomicrobium , and between Tannerella and Anaerophaga .

conclusionsAlthough at the higher taxonomical level gut microbiota was similar between healthy and IBS-D children, specific differences in the abundances of several bacterial genera were revealed. Core microbiome in children was dominated by Clostridia. Putative relationships identified among microbial genera provide testable hypotheses of cross-species associations among members of human gut microbiota

Indexed as

AdolescentBacteriaChildDiarrheaDNA, BacterialFemaleGenome, BacterialHumansIn Situ Hybridization, FluorescenceIrritable Bowel SyndromeMaleOligonucleotide Array Sequence AnalysisReal-Time Polymerase Chain ReactionStatistics, NonparametricDNA, Bacterial

Identifiers

PMID22986438
OpenAlexW2017815964

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.