Evidence map›Paper›PMID 22985881›Full record

ArticleAntimicrobial agents and chemotherapy2012

Bacterial resistance to antisense peptide phosphorodiamidate morpholino oligomers.

Susan E Puckett, Kaleb A Reese, Georgi M Mitev, Valerie Mullen, Rudd C Johnson, Kyle R Pomraning, Brett L Mellbye, Lucas D Tilley, Patrick L Iversen, Michael Freitag and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Chemical strategies for antisense antibiotics.Chemical Society reviews · 2024
    Review
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  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
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  16. Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Susan E PuckettDepartment of Microbiology, Oregon State University, Corvallis, OR, USA.
Kaleb A Reese
Georgi M Mitev
Valerie Mullen
Rudd C Johnson
Kyle R Pomraning
Brett L Mellbye
Lucas D Tilley
Patrick L Iversen
Michael Freitag
Bruce L Geller
Oregon State University · USSarepta Therapeutics (United States) · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

Peptide phosphorodiamidate morpholino oligomers (PPMOs) are synthetic DNA mimics that bind cRNA and inhibit bacterial gene expression. The PPMO (RFF)(3)RXB-AcpP (where R is arginine, F, phenylalanine, X is 6-aminohexanoic acid, B is β-alanine, and AcpP is acyl carrier protein) is complementary to 11 bases of the essential gene acpP (which encodes acyl carrier protein). The MIC of (RFF)(3)RXB-AcpP was 2.5 μM (14 μg/ml) in Escherichia coli W3110. The rate of spontaneous resistance of E. coli to (RFF)(3)RXB-AcpP was 4 × 10(-7) mutations/cell division. A spontaneous (RFF)(3)RXB-AcpP-resistant mutant (PR200.1) was isolated. The MIC of (RFF)(3)RXB-AcpP was 40 μM (224 μg/ml) for PR200.1. The MICs of standard antibiotics for PR200.1 and W3110 were identical. The sequence of acpP was identical in PR200.1 and W3110. PR200.1 was also resistant to other PPMOs conjugated to (RFF)(3)RXB or peptides with a similar composition or pattern of cationic and nonpolar residues. Genomic sequencing of PR200.1 identified a mutation in sbmA, which encodes an active transport protein. In separate experiments, a (RFF)(3)RXB-AcpP-resistant isolate (RR3) was selected from a transposome library, and the insertion was mapped to sbmA. Genetic complementation of PR200.1 or RR3 with sbmA restored susceptibility to (RFF)(3)RXB-AcpP. Deletion of sbmA caused resistance to (RFF)(3)RXB-AcpP. We conclude that resistance to (RFF)(3)RXB-AcpP was linked to the peptide and not the phosphorodiamidate morpholino oligomer, dependent on the composition or repeating pattern of amino acids, and caused by mutations in sbmA. The data further suggest that (RFF)(3)R-XB PPMOs may be transported across the plasma membrane by SbmA.

Indexed as

DNA, AntisenseAllelesAnti-Bacterial AgentsBiological TransportDNA Transposable ElementsDrug Resistance, BacterialEscherichia coliEscherichia coli ProteinsGenetic Complementation TestGenome, BacterialLuciferasesMembrane Transport ProteinsMicrobial Sensitivity TestsMorpholinesOrganophosphorus CompoundsPeptidesAnti-Bacterial AgentsDNA, AntisenseDNA Transposable ElementsEscherichia coli ProteinsLuciferasesMembrane Transport ProteinsMorpholinesOrganophosphorus CompoundsPeptidesPolymersSbmA protein, E coli

Identifiers

PMID22985881
PMCPMC3497173
OpenAlexW2159108458

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.