Evidence map›Paper›PMID 22984449›Full record

ArticlePloS one2012

High inorganic triphosphatase activities in bacteria and mammalian cells: identification of the enzymes involved.

Gregory Kohn, David Delvaux, Bernard Lakaye, Anne-Catherine Servais, Georges Scholer, Marianne Fillet, Benjamin Elias, Jean-Michel Derochette, Jacques Crommen, Pierre Wins and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

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  10. GTP activator and dNTP substrates of HIV-1 restriction factor SAMHD1 generate a long-lived activated state.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Gregory KohnGIGA-Neurosciences, University of Liège, Liège, Belgium.
David Delvaux
Bernard Lakaye
Anne-Catherine Servais
Georges Scholer
Marianne Fillet
Benjamin Elias
Jean-Michel Derochette
Jacques Crommen
Pierre Wins
Lucien Bettendorff
University of Liège · BEUCLouvain · BEPrayon (Belgium) · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWe recently characterized a specific inorganic triphosphatase (PPPase) from Nitrosomonas europaea. This enzyme belongs to the CYTH superfamily of proteins. Many bacterial members of this family are annotated as predicted adenylate cyclases, because one of the founding members is CyaB adenylate cyclase from A. hydrophila. The aim of the present study is to determine whether other members of the CYTH protein family also have a PPPase activity, if there are PPPase activities in animal tissues and what enzymes are responsible for these activities. METHODOLOGY/PRINCIPAL

findingsRecombinant enzymes were expressed and purified as GST- or His-tagged fusion proteins and the enzyme activities were determined by measuring the release of inorganic phosphate. We show that the hitherto uncharacterized E. coli CYTH protein ygiF is a specific PPPase, but it contributes only marginally to the total PPPase activity in this organism, where the main enzyme responsible for hydrolysis of inorganic triphosphate (PPP(i)) is inorganic pyrophosphatase. We further show that CyaB hydrolyzes PPP(i) but this activity is low compared to its adenylate cyclase activity. Finally we demonstrate a high PPPase activity in mammalian and quail tissue, particularly in the brain. We show that this activity is mainly due to Prune, an exopolyphosphatase overexpressed in metastatic tumors where it promotes cell motility. CONCLUSIONS AND GENERAL SIGNIFICANCE: We show for the first time that PPPase activities are widespread in bacteria and animals. We identified the enzymes responsible for these activities but we were unable to detect significant amounts of PPP(i) in E. coli or brain extracts using ion chromatography and capillary electrophoresis. The role of these enzymes may be to hydrolyze PPP(i), which could be cytotoxic because of its high affinity for Ca(2+), thereby interfering with Ca(2+) signaling.

Indexed as

Adenosine TriphosphateAdenylyl CyclasesAmino Acid SequenceAnimalsBacteriaBiocatalysisCell SurvivalElectrophoresis, CapillaryEscherichia coliEscherichia coli ProteinsHydrolysisInorganic ChemicalsInorganic PyrophosphataseMammalsMolecular Sequence DataNitrosomonas europaeaAdenosine TriphosphateAdenylyl CyclasesEscherichia coli ProteinsInorganic ChemicalsInorganic PyrophosphatasePhosphoprotein PhosphatasesPolyphosphatesRecombinant Proteinstriphosphoric acid

Identifiers

PMID22984449
PMCPMC3440374
OpenAlexW2078879214

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.