Evidence map›Paper›PMID 22984432›Full record

ArticlePloS one2012

Dynamics of ceramide channels detected using a microfluidic system.

Chenren Shao, Bing Sun, Don L DeVoe, Marco Colombini

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Ceramide channels and mitochondrial outer membrane permeability.Journal of bioenergetics and biomembranes · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Chenren ShaoDepartment of Mechanical Engineering, University of Maryland, College Park, Maryland, United States of America.
Bing Sun
Don L DeVoe
Marco Colombini
University of Maryland, College Park · US

Funding

Microfluidic Platform for Probing Ceramide ChannelsR21EB009485 · NIBIB · UNIV OF MARYLAND, COLLEGE PARK · PI DEVOE, DON L · 2009 to 2010
$399k
Single Molecule Mass Spectrometry in a Microfluidic Nanopore ChipR21EB011750 · NIBIB · UNIV OF MARYLAND, COLLEGE PARK · PI DEVOE, DON L · 2010 to 2010
$214k
NIBIB NIH HHS R21 EB009485NIBIB NIH HHS R21EB009485NIBIB NIH HHS R21 EB011750NIBIB NIH HHS R21EB011750
6 · The paper itself

Abstract

Ceramide, a proapoptotic sphingolipid, has been shown to form channels, in mitochondrial outer membranes, large enough to translocate proteins. In phospholipid membranes, electrophysiological studies and electron microscopic visualization both report that these channels form in a range of sizes with a modal value of 10 nm in diameter. A hydrogen bonded barrel-like structure consisting of hundreds of ceramide molecules has been proposed for the structure of the channel and this is supported by electrophysiological studies and molecular dynamic simulations. To our knowledge, the mechanical strength and deformability of such a large diameter but extremely thin cylindrical structure has never been reported. Here we present evidence for a reversible mechanical distortion of the cylinder following the addition of La(3+). A microfluidic system was used to repeatedly lower and then restore the conductance by alternatively perfusing La(3+) and EDTA. Although aspects of the kinetics of conductance drop and recovery are consistent with a disassembly/diffusion/reassembly model, others are inconsistent with the expected time scale of lateral diffusion of disassembled channel fragments in the membrane. The presence of a residual conductance following La(3+) treatment and the relationship between the residual conductance and the initial conductance were both indicative of a distortion/recovery process in analogy with a pressure-induced distortion of a flexible cylinder.

Indexed as

Cell MembraneCeramidesEdetic AcidIon Channel GatingIon ChannelsLanthanumMicrofluidicsModels, BiologicalModels, MolecularPressureTime FactorsCeramidesEdetic AcidIon ChannelsLanthanum

Identifiers

PMID22984432
PMCPMC3440423
OpenAlexW2018615255

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.