Evidence map›Paper›PMID 22984422›Full record

ArticlePloS one2012

Global genome analysis of the downstream binding targets of testis determining factor SRY and SOX9.

Ramji K Bhandari, Md M Haque, Michael K Skinner

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Androgen insensitivity syndrome: a review.Journal of endocrinological investigation · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Role of the bHLH transcription factor TCF21 in development and tumorigenesis.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2021
    Review
  10. Article
  11. Putative contributions of the sex chromosome proteins SOX3 and SRY to neurodevelopmental disorders.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. SOX9 drives WNT pathway activation in prostate cancer.The Journal of clinical investigation · 2016
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ramji K BhandariCenter for Reproductive Biology, School of Biological Sciences, Washington State University, Pullman, Washington, United States of America.
Md M Haque
Michael K Skinner

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A major event in mammalian male sex determination is the induction of the testis determining factor Sry and its downstream gene Sox9. The current study provides one of the first genome wide analyses of the downstream gene binding targets for SRY and SOX9 to help elucidate the molecular control of Sertoli cell differentiation and testis development. A modified ChIP-Chip analysis using a comparative hybridization was used to identify 71 direct downstream binding targets for SRY and 109 binding targets for SOX9. Interestingly, only 5 gene targets overlapped between SRY and SOX9. In addition to the direct response element binding gene targets, a large number of atypical binding gene targets were identified for both SRY and SOX9. Bioinformatic analysis of the downstream binding targets identified gene networks and cellular pathways potentially involved in the induction of Sertoli cell differentiation and testis development. The specific DNA sequence binding site motifs for both SRY and SOX9 were identified. Observations provide insights into the molecular control of male gonadal sex determination.

Indexed as

AnimalsBase SequenceChromatin ImmunoprecipitationGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Regulatory NetworksGenomeMaleMolecular Sequence DataNucleotide MotifsPolymerase Chain ReactionPromoter Regions, GeneticProtein BindingRatsRats, Sprague-DawleyReproducibility of ResultsSex-Determining Region Y ProteinSOX9 Transcription FactorSry protein, rat

Identifiers

PMID22984422
PMCPMC3440412

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.