Evidence map›Paper›PMID 22984288›Full record

ArticleMolecular & cellular proteomics : MCP2012

Human family with sequence similarity 60 member A (FAM60A) protein: a new subunit of the Sin3 deacetylase complex.

Karen T Smith, Mihaela E Sardiu, Skylar A Martin-Brown, Chris Seidel, Arcady Mushegian, Rhonda Egidy, Laurence Florens, Michael P Washburn, Jerry L Workman

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 58 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Karen T SmithStowers Institute for Medical Research, Kansas City, Missouri 64110, USA.
Mihaela E Sardiu
Skylar A Martin-Brown
Chris Seidel
Arcady Mushegian
Rhonda Egidy
Laurence Florens
Michael P Washburn
Jerry L Workman
Stowers Institute for Medical Research · USUniversity of Kansas Medical Center · US

Funding

Mechanisms of Transcriptional Regulation in ChromatinR37GM047867 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI WORKMAN, JERRY L · 2001 to 2010
$3.4M
Novel HDAC-interacting proteins that regulate breast cancer cell growthF32CA130468 · NCI · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI SMITH, KAREN · 2007 to 2008
$65k
NCI NIH HHS 5F32CA130468NCI NIH HHS F32 CA130468NIGMS NIH HHS R37 GM047867
6 · The paper itself

Abstract

Here we describe the function of a previously uncharacterized protein, named family with sequence similarity 60 member A (FAM60A) that maps to chromosome 12p11 in humans. We use quantitative proteomics to determine that the main biochemical partners of FAM60A are subunits of the Sin3 deacetylase complex and show that FAM60A resides in active HDAC complexes. In addition, we conduct gene expression pathway analysis and find that FAM60A regulates expression of genes that encode components of the TGF-beta signaling pathway. Moreover, our studies reveal that loss of FAM60A or another component of the Sin3 complex, SDS3, leads to a change in cell morphology and an increase in cell migration. These studies reveal the function of a previously uncharacterized protein and implicate the Sin3 complex in suppressing cell migration.

Indexed as

Gene Expression RegulationCell LineCell MovementDNA-Binding ProteinsGene Expression ProfilingHEK293 CellsHep G2 CellsHistone Deacetylase InhibitorsHomeodomain ProteinsHumansProtein Structure, TertiaryReceptors, Cytoplasmic and NuclearRepressor ProteinsRNA InterferenceRNA, Small InterferingSequence Analysis, ProteinDNA-Binding ProteinsHistone Deacetylase InhibitorsHomeodomain ProteinsING2 protein, humanReceptors, Cytoplasmic and NuclearRepressor ProteinsRNA, Small InterferingSin3 Histone Deacetylase and Corepressor ComplexSINHCAF protein, humanSUDS3 protein, humanTransforming Growth Factor betaTumor Suppressor Proteins

Identifiers

PMID22984288
PMCPMC3518139
OpenAlexW2153247544

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.