Evidence map›Paper›PMID 22983436›Full record

ArticleLab on a chip2012

Capture, isolation and release of cancer cells with aptamer-functionalized glass bead array.

Yuan Wan, Yaling Liu, Peter B Allen, Waseem Asghar, M Arif Iftakher Mahmood, Jifu Tan, Holli Duhon, Young-tae Kim, Andrew D Ellington, Samir M Iqbal

Abstract read
In one paragraph

Article in Lab on a chip, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Traceless aptamer-mediated isolation of CD8Nature biomedical engineering · 2019
    Article
  9. Article
  10. Article
  11. Programmable hydrogels.Biomaterials · 2018
    Review
  12. Numerical simulation of cell squeezing through a micropore by the immersed boundary method.Proceedings of the Institution of Mechanical Engineers. Part C. Journal of mechanical engineering science · 2018
    Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yuan WanDepartment of Bioengineering, University of Texas at Arlington, Arlington, Texas, USA.
Yaling Liu
Peter B Allen
Waseem Asghar
M Arif Iftakher Mahmood
Jifu Tan
Holli Duhon
Young-tae Kim
Andrew D Ellington
Samir M Iqbal

Funding

Photodestruction of Ovarian Cancer: ErbB3 Targeted Aptamer Nanoparticle ConjugateR01CA119388 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI HASAN, TAYYABA · 2005 to 2009
$2.6M
Amorphous computation with transcription logic gatesR01GM094933 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ELLINGTON, ANDREW D · 2010 to 2013
$1.2M
Directed evolution of RNA ligases for high-throughput sequencingR21HG005763 · NHGRI · UNIVERSITY OF TEXAS AT AUSTIN · PI ELLINGTON, ANDREW D · 2010 to 2011
$448k
Modeling Particle Shape Effect in NanomedicineR03EB009786 · NIBIB · UNIVERSITY OF TEXAS ARLINGTON · PI LIU, YALING · 2009 to 2010
$144k
Enzyme Bioreactor for Optimized Production of Modified Nucleic AcidsF32GM095280 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ALLEN, PETER B · 2010 to 2011
$99k
NCI NIH HHS 5R01CA119388-05NCI NIH HHS R01 CA119388NHGRI NIH HHS 1-R21-HG005763-01NHGRI NIH HHS R21 HG005763NIBIB NIH HHS EB009786NIBIB NIH HHS R03 EB009786NIGMS NIH HHS F32 GM095280NIGMS NIH HHS GM095280NIGMS NIH HHS R01 GM094933
6 · The paper itself

Abstract

Early detection and isolation of circulating tumor cells (CTC) can enable better prognosis for cancer patients. A Hele-Shaw device with aptamer functionalized glass beads is designed, modeled, and fabricated to efficiently isolate cancer cells from a cellular mixture. The glass beads are functionalized with anti-epidermal growth factor receptor (EGFR) aptamer and sit in ordered array of pits in polydimethylsiloxane (PDMS) channel. A PDMS encapsulation is then used to cover the channel and to flow through cell solution. The beads capture cancer cells from flowing solution depicting high selectivity. The cell-bound glass beads are then re-suspended from the device surface followed by the release of 92% cells from glass beads using combination of soft shaking and anti-sense RNA. This approach ensures that the cells remain in native state and undisturbed during capture, isolation and elution for post-analysis. The use of highly selective anti-EGFR aptamer with the glass beads in an array and subsequent release of cells with antisense molecules provide multiple levels of binding and release opportunities that can help in defining new classes of CTC enumeration devices.

Indexed as

MicrospheresAptamers, NucleotideBase SequenceBlood Specimen CollectionCell SeparationDimethylpolysiloxanesEquipment DesignErbB ReceptorsErythrocytesGlassHumansMechanical PhenomenaMolecular Sequence DataNeoplastic Cells, CirculatingAptamers, NucleotidebaysilonDimethylpolysiloxanesErbB Receptors

Identifiers

PMID22983436
PMCPMC3498495

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.