Evidence map›Paper›PMID 22982024›Full record

ArticleExperimental eye research2012

Changes in solvent accessibility of wild-type and deamidated βB2-crystallin following complex formation with αA-crystallin.

Kirsten J Lampi, Cade B Fox, Larry L David

Open access · greenAbstract read
In one paragraph

Article in Experimental eye research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

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  10. Review
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  12. Group II archaeal chaperonin recognition of partially folded human γD-crystallin mutants.Protein science : a publication of the Protein Society · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kirsten J LampiOregon Health and Science University, Integrative Biosciences, 611 SW Campus Dr., Portland, OR 97239, USA. lampik@ohsu.edu
Cade B Fox
Larry L David
Oregon Health & Science University · US

Funding

Understanding the origins of rapid recurrence of pancreatic cancer after resectionP30CA069533 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Luiz Eduardo Bertassoni · 1997 to 2026
$60.5M
Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI TED S ACOTT · 1995 to 2026
$19.4M
PROTEIN CLEAVAGE SITES IN EXPERIMENTAL CATARACTOUS LENSR01EY007755 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, LARRY L · 1995 to 2014
$3.6M
Role of Deamidation in Human Beta-Crystallin StructureR01EY012239 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI LAMPI, KIRSTEN JEANNE · 2004 to 2012
$2.2M
DEAMIDATION AND HUMAN BETA CRYSTALLIN STRUCTURER29EY012239 · NEI · OREGON HEALTH AND SCIENCE UNIVERSITY · PI LAMPI, KIRSTEN JEANNE · 1998 to 2002
$433k
PROTEIN CLEAVAGE SITES IN EXPERIMENTAL CATARACTOUS LENSER29EY007755 · NEI · OREGON HEALTH AND SCIENCE UNIVERSITY · PI DAVID, LARRY L · 1989 to 1993
–
NCI NIH HHS CA069533NCI NIH HHS P30 CA069533NEI NIH HHS EY007755NEI NIH HHS EY012239NEI NIH HHS EY10572NEI NIH HHS P30 EY010572NEI NIH HHS R01 EY007755NEI NIH HHS R01 EY012239NEI NIH HHS R29 EY012239
6 · The paper itself

Abstract

Aberrant protein interactions can lead to aggregation and insolubilization, such as occurs during cataract formation. Deamidation, a prevalent age-related modification in the lens of the eye, decreases stability of the major lens proteins, crystallins. The mechanism of deamidation altering interactions between αA-crystallin and βB2-crystallin was investigated by detecting changes in solvent accessibility upon complex formation during heating. Solvent accessibility was determined by measuring hydrogen/deuterium exchange levels of backbone amides by high-resolution mass spectrometry. Deuterium levels in wild type βB2-crystallin increased 50-60% in both domains following complex formation with αA-crystallin. This increased solvent accessibility indicated a general loosening along the backbone amides. Peptides with the greatest deuterium increases were located at the buried monomer-monomer interface, suggesting that the βB2 dimer was disrupted. The only region where the deuterium levels decreased was in βB2 peptide 123-139, containing an outside loop, and may be a potential site of interaction with αA. Mimicking deamidation at the βB2 dimer interface prevented complex formation with αA. When temperatures were lowered, an αA/βB2 Q70E/Q162E complex formed with similar solvent accessibilities as αA/WT βB2. Deamidation did not disrupt specific αA/βB2 interactions but favored aggregation before complex formation with αA. We conclude that deamidation contributes to cataract formation through destabilization of crystallins before they can be rescued by α-crystallin.

Indexed as

alpha-Crystallin A Chainbeta-Crystallin B ChainChromatography, GelDeaminationDeuterium Exchange MeasurementElectrophoresis, Polyacrylamide GelHumansLens, CrystallineMass SpectrometryPeptide FragmentsSolventsalpha-Crystallin A Chainbeta-crystallin B2beta-Crystallin B ChainPeptide FragmentsSolvents

Identifiers

PMID22982024
PMCPMC3490024
OpenAlexW2038306151

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.