Evidence map›Paper›PMID 22981606›Full record

ArticleDevelopmental biology2012

Id2a functions to limit Notch pathway activity and thereby influence the transition from proliferation to differentiation of retinoblasts during zebrafish retinogenesis.

Rosa A Uribe, Taejoon Kwon, Edward M Marcotte, Jeffrey M Gross

Abstract read
In one paragraph

Article in Developmental biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. [Notch signaling pathway inhibitor DAPT improves alcohol-induced neuronal differentiation impairment in zebrafish].Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2023
    Article
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  10. Article
  11. Article
  12. Yap and Taz regulate retinal pigment epithelial cell fate.Development (Cambridge, England) · 2015
    Article
  13. RNA-Seq technology and its application in fish transcriptomics.Omics : a journal of integrative biology · 2014
    Review
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Rosa A UribeSection of Molecular Cell and Developmental Biology, The University of Texas at Austin, Austin, TX 78712, USA.
Taejoon Kwon
Edward M Marcotte
Jeffrey M Gross
The University of Texas at Austin · US

Funding

ZEBRAFISH INTERNATIONAL RESOURCE CENTERP40RR012546 · NCRR · UNIVERSITY OF OREGON · PI WESTERFIELD, MONTE · 1998 to 2011
$21.9M
Genetic Regulation of Eye Development in ZebrafishR01EY018005 · NEI · UNIVERSITY OF TEXAS AT AUSTIN · PI GROSS, JEFFREY · 2008 to 2017
$3.3M
The In Vivo Function of Id2 in Retinal Proliferation and DifferentiationF31EY019239 · NEI · UNIVERSITY OF TEXAS AT AUSTIN · PI URIBE, ROSA A · 2008 to 2011
$138k
NCRR NIH HHS P40 RR012546NCRR NIH HHS P40-RR012546NEI NIH HHS F31 EY019239NEI NIH HHS F31-EY019239NEI NIH HHS R01 EY018005NEI NIH HHS R01-EY18005
6 · The paper itself

Abstract

During vertebrate retinogenesis, the precise balance between retinoblast proliferation and differentiation is spatially and temporally regulated through a number of intrinsic factors and extrinsic signaling pathways. Moreover, there are complex gene regulatory network interactions between these intrinsic factors and extrinsic pathways, which ultimately function to determine when retinoblasts exit the cell cycle and terminally differentiate. We recently uncovered a cell non-autonomous role for the intrinsic HLH factor, Id2a, in regulating retinoblast proliferation and differentiation, with Id2a-deficient retinae containing an abundance of proliferative retinoblasts and an absence of terminally differentiated retinal neurons and glia. Here, we report that Id2a function is necessary and sufficient to limit Notch pathway activity during retinogenesis. Id2a-deficient retinae possess elevated levels of Notch pathway component gene expression, while retinae overexpressing id2a possess reduced expression of Notch pathway component genes. Attenuation of Notch signaling activity by DAPT or by morpholino knockdown of Notch1a is sufficient to rescue both the proliferative and differentiation defects in Id2a-deficient retinae. In addition to regulating Notch pathway activity, through a novel RNA-Seq and differential gene expression analysis of Id2a-deficient retinae, we identify a number of additional intrinsic and extrinsic regulatory pathway components whose expression is regulated by Id2a. These data highlight the integral role played by Id2a in the gene regulatory network governing the transition from retinoblast proliferation to terminal differentiation during vertebrate retinogenesis.

Indexed as

Cell DifferentiationCell ProliferationAnimalsGene Expression Regulation, DevelopmentalGene Regulatory NetworksHomeodomain ProteinsInhibitor of Differentiation Protein 2Nerve Tissue ProteinsReceptor, Notch1RetinaSignal TransductionZebrafishZebrafish ProteinsHomeodomain ProteinsId2a protein, zebrafishInhibitor of Differentiation Protein 2Nerve Tissue Proteinsnotch1a protein, zebrafishReceptor, Notch1Zebrafish Proteins

Identifiers

PMID22981606
PMCPMC3477674
OpenAlexW2140532974

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.