Evidence map›Paper›PMID 22977732›Full record

ArticleOpen biology2012

Crystal structure of folliculin reveals a hidDENN function in genetically inherited renal cancer.

Ravi K Nookala, Lars Langemeyer, Angela Pacitto, Bernardo Ochoa-Montaño, Jane C Donaldson, Beata K Blaszczyk, Dimitri Y Chirgadze, Francis A Barr, J Fernando Bazan, Tom L Blundell

Open access · goldAbstract read
In one paragraph

Article in Open biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 105 citations in OpenAlex.

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  16. Ultra-rare cystic disease.European respiratory review : an official journal of the European Respiratory Society · 2020
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  19. Cryo-EM structure of C9ORF72-SMCR8-WDR41 reveals the role as a GAP for Rab8a and Rab11a.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Ravi K NookalaDepartment of Biochemistry , University of Cambridge, Sanger Building, 80 Tennis Court Road, Cambridge CB2 1GA, UK. rn229@cam.ac.uk
Lars Langemeyer
Angela Pacitto
Bernardo Ochoa-Montaño
Jane C Donaldson
Beata K Blaszczyk
Dimitri Y Chirgadze
Francis A Barr
J Fernando Bazan
Tom L Blundell
University of Cambridge · GBUniversity of Oxford · GB

Funding

Wellcome Trust 097769
6 · The paper itself

Abstract

Mutations in the renal tumour suppressor protein, folliculin, lead to proliferative skin lesions, lung complications and renal cell carcinoma. Folliculin has been reported to interact with AMP-activated kinase, a key component of the mammalian target of rapamycin pathway. Most cancer-causing mutations lead to a carboxy-terminal truncation of folliculin, pointing to a functional importance of this domain in tumour suppression. We present here the crystal structure of folliculin carboxy-terminal domain and demonstrate that it is distantly related to differentially expressed in normal cells and neoplasia (DENN) domain proteins, a family of Rab guanine nucleotide exchange factors (GEFs). Using biochemical analysis, we show that folliculin has GEF activity, indicating that folliculin is probably a distantly related member of this class of Rab GEFs.

Indexed as

Amino Acid SequenceCarcinoma, Renal CellCrystallography, X-RayDeath Domain Receptor Signaling Adaptor ProteinsElectrophoresis, Polyacrylamide GelGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine TriphosphateHumansKidney NeoplasmsModels, MolecularMolecular Sequence DataMutationProtein Structure, SecondaryProtein Structure, TertiaryProto-Oncogene ProteinsDeath Domain Receptor Signaling Adaptor ProteinsDENND1B protein, humanFLCN protein, humanGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine TriphosphateProto-Oncogene ProteinsTumor Suppressor ProteinsBirt–Hogg–Dubé syndromeDENNfolliculinrenal cell carcinoma

Identifiers

PMID22977732
PMCPMC3438538
OpenAlexW2086327073

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.