Evidence map›Paper›PMID 22977280›Full record

ArticlePlant physiology2012

Targeted systems biology profiling of tomato fruit reveals coordination of the Yang cycle and a distinct regulation of ethylene biosynthesis during postclimacteric ripening.

Bram Van de Poel, Inge Bulens, Aikaterina Markoula, Maarten L A T M Hertog, Rozemarijn Dreesen, Markus Wirtz, Sandy Vandoninck, Yasmin Oppermann, Johan Keulemans, Ruediger Hell and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
11.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 138 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
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  14. Thorough Characterization ofFoods (Basel, Switzerland) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Bram Van de PoelDivision of Mechatronics, Biostatistics, and Sensors, Department of Biosystems, KU Leuven, 3001 Leuven, Belgium.
Inge Bulens
Aikaterina Markoula
Maarten L A T M Hertog
Rozemarijn Dreesen
Markus Wirtz
Sandy Vandoninck
Yasmin Oppermann
Johan Keulemans
Ruediger Hell
Etienne Waelkens
Maurice P De Proft
Margret Sauter
Bart M Nicolai
Annemie H Geeraerd
Heidelberg University · DEKU Leuven · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The concept of system 1 and system 2 ethylene biosynthesis during climacteric fruit ripening was initially described four decades ago. Although much is known about fruit development and climacteric ripening, little information is available about how ethylene biosynthesis is regulated during the postclimacteric phase. A targeted systems biology approach revealed a novel regulatory mechanism of ethylene biosynthesis of tomato (Solanum lycopersicum) when fruit have reached their maximal ethylene production level and which is characterized by a decline in ethylene biosynthesis. Ethylene production is shut down at the level of 1-aminocyclopropane-1-carboxylic acid oxidase. At the same time, 1-aminocyclopropane-1-carboxylic acid synthase activity increases. Analysis of the Yang cycle showed that the Yang cycle genes are regulated in a coordinated way and are highly expressed during postclimacteric ripening. Postclimacteric red tomatoes on the plant showed only a moderate regulation of 1-aminocyclopropane-1-carboxylic acid synthase and Yang cycle genes compared with the regulation in detached fruit. Treatment of red fruit with 1-methylcyclopropane and ethephon revealed that the shut-down mechanism in ethylene biosynthesis is developmentally programmed and only moderately ethylene sensitive. We propose that the termination of autocatalytic ethylene biosynthesis of system 2 in ripe fruit delays senescence and preserves the fruit until seed dispersal.

Indexed as

Metabolic Networks and PathwaysAmino Acid OxidoreductasesAmino Acids, CyclicBiocatalysisBlotting, WesternCell RespirationEthylenesFruitGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantLyasesMetabolomicsModels, BiologicalPlant ProteinsPrincipal Component Analysis1-aminocyclopropane-1-carboxylic acid1-aminocyclopropane-1-carboxylic acid oxidase1-aminocyclopropanecarboxylate synthaseAmino Acid OxidoreductasesAmino Acids, CyclicethyleneEthylenesLyasesPlant Proteins

Identifiers

PMID22977280
PMCPMC3490579
OpenAlexW2165589293

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.