Evidence map›Paper›PMID 22977073›Full record

ArticleJournal of medical microbiology2012

Genetic characteristics of drug-resistant Vibrio cholerae O1 causing endemic cholera in Dhaka, 2006-2011.

Shah M Rashed, Shahnewaj B Mannan, Fatema-Tuz Johura, M Tarequl Islam, Abdus Sadique, Haruo Watanabe, R Bradley Sack, Anwar Huq, Rita R Colwell, Alejandro Cravioto and 1 more

Abstract read
In one paragraph

Article in Journal of medical microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

  1. Pooled it
  2. Molecular characterization ofIJID regions · 2026
    Article
  3. Article
  4. Article
  5. Resistance ofFrontiers in pharmacology · 2023
    Review
  6. Article
  7. Characterisation ofThe Pan African medical journal · 2020
    Article
  8. Novel Cholera Toxin Variant and ToxT Regulon in EnvironmentalApplied and environmental microbiology · 2019
    Article
  9. Speciation, clinical profile & antibiotic resistance inThe Indian journal of medical research · 2017
    Article
  10. Frontiers in microbiology · 2017
    Article
  11. Article
  12. Transmission of InfectiousFrontiers in microbiology · 2016
    Article
  13. Article
  14. The increased severity in patients presenting to hospital with diarrhea in Dhaka, Bangladesh since the emergence of the hybrid strain of Vibrio cholerae O1 is not unique to cholera patients.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2015
    Article
  15. Article
  16. Bacterial shedding in household contacts of cholera patients in Dhaka, Bangladesh.The American journal of tropical medicine and hygiene · 2014
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Shah M RashedInternational Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Shahnewaj B MannanInternational Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Fatema-Tuz JohuraInternational Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
M Tarequl IslamInternational Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Abdus SadiqueInternational Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Haruo WatanabeNational Institute of Infectious Diseases, Tokyo, Japan.
R Bradley SackJohns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.
Anwar HuqMaryland Pathogen Research Institute, University of Maryland, MD, USA.
Rita R ColwellCenter for Bioinformatics and Computational Biology, University of Maryland, MD, USA.
Alejandro CraviotoInternational Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Munirul AlamInternational Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
International Centre for Diarrhoeal Disease Research · BDJohns Hopkins University · USNational Institute of Infectious Diseases · JP

Funding

EPIDEMIOLOGY &ECOLOGY OF VIBRIO CHOLERAE IN BANGLADESHR01AI039129 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SACK, DAVID A · 1996 to 2014
$15.2M
NIAID NIH HHS R01 AI039129NIAID NIH HHS R01AI039129
6 · The paper itself

Abstract

Vibrio cholerae O1 biotype El Tor (ET), causing the seventh cholera pandemic, was recently replaced in Bangladesh by an altered ET possessing ctxB of the Classical (CL) biotype, which caused the first six cholera pandemics. In the present study, V. cholerae O1 strains associated with endemic cholera in Dhaka between 2006 and 2011 were analysed for major phenotypic and genetic characteristics. Of 54 representative V. cholerae isolates tested, all were phenotypically ET and showed uniform resistance to trimethoprim/sulfamethoxazole (SXT) and furazolidone (FR). Resistance to tetracycline (TE) and erythromycin (E) showed temporal fluctuation, varying from year to year, while all isolates were susceptible to gentamicin (CN) and ciprofloxacin (CIP). Year-wise data revealed erythromycin resistance to be 33.3 % in 2006 and 11 % in 2011, while tetracycline resistance accounted for 33, 78, 0, 100 and 27 % in 2006, 2007, 2008, 2009 and 2010, respectively; interestingly, all isolates tested were sensitive to TE in 2011, as observed in 2008. All V. cholerae isolates tested possessed genetic elements such as SXT, ctxAB, tcpA(ET), rstR(ET) and rtxC; none had IntlI (Integron I). Double mismatch amplification mutation assay (DMAMA)-PCR followed by DNA sequencing and analysis of the ctxB gene revealed a point mutation at position 58 (C→A), which has resulted in an amino acid substitution from histidine (H) to asparagine (N) at position 20 (genotype 7) since 2008. Although the multi-resistant strains having tetracycline resistance showed minor genetic divergence, V. cholerae strains were clonal, as determined by a PFGE (NotI)-based dendrogram. This study shows 2008-2010 to be the time of transition from ctxB genotype 1 to genotype 7 in V. cholerae ET causing endemic cholera in Dhaka, Bangladesh.

Indexed as

Endemic DiseasesAmino Acid SequenceAnti-Bacterial AgentsBacterial Typing TechniquesBangladeshBase Sequencebeta-LactamasesCholeraCiprofloxacinDNA, BacterialDrug Resistance, Multiple, BacterialErythromycinFurazolidoneGenetic VariationGentamicinsHumansAnti-Bacterial Agentsbeta-LactamasesCiprofloxacinDNA, BacterialErythromycinFurazolidoneGentamicinsSulfamethoxazoleTetracyclineTrimethoprim

Identifiers

PMID22977073
PMCPMC4080733
OpenAlexW2014472943

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.