Evidence map›Paper›PMID 22976340›Full record

ArticleMicrobial ecology2013

Culture-dependent and independent studies of microbial diversity in highly copper-contaminated Chilean marine sediments.

Ludovic Besaury, Florence Marty, Sylvaine Buquet, Valérie Mesnage, Gerard Muyzer, Laurent Quillet

Abstract read
PubMed Publisher
In one paragraph

Article in Microbial ecology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 37 citations in OpenAlex.

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  10. Distinct diversity of the czcA gene in two sedimentary horizons from a contaminated estuarine core.Environmental science and pollution research international · 2014
    Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Ludovic BesauryUMR CNRS 6143 M2C-groupe Microbiologie, Université de Rouen, Mont Saint Aignan, Rouen, France. ludovic.besaury@etu.univ-rouen.fr
Florence Marty
Sylvaine Buquet
Valérie Mesnage
Gerard Muyzer
Laurent Quillet
Centre National de la Recherche Scientifique · FRLaboratoire Analyse et Modélisation pour la Biologie et l'Environnement · FRDelft University of Technology · NLUniversity of Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cultivation and molecular-based approaches were used to study microbial diversity in two Chilean marine sediments contaminated with high (835 ppm) and very high concentrations of copper (1,533 ppm). The diversity of cultivable bacteria resistant to copper was studied at oxic and anoxic conditions, focusing on sulfate-, thiosulfate-, and iron-reducing bacteria. For both sediments, the cultivable bacteria isolated at oxic conditions were mostly affiliated to the genus Bacillus, while at anoxic conditions the majority of the cultivable bacteria found were closely related to members of the genera Desulfovibrio, Sphingomonas, and Virgibacillus. Copper resistance was between 100 and 400 ppm, with the exception of a strain affiliated to members of the genus Desulfuromonas, which was resistant up to 1,000 ppm of copper. In parallel, cloning and sequencing of 16S rRNA was performed to study the total bacterial diversity in the sediments. A weak correlation was observed between the isolated strains and the 16S rRNA operational taxonomic units detected. The presence of copper resistance genes (copA, cusA, and pcoA) was tested for all the strains isolated; only copA was detected in a few isolates, suggesting that other copper resistance mechanisms could be used by the bacteria in those highly copper-contaminated sediments.

Indexed as

BiodiversityBacteriaChileCopperGene LibraryGenes, BacterialGeologic SedimentsPhylogenyRNA, Ribosomal, 16SSeawaterSulfur-Reducing BacteriaWater MicrobiologyWater PollutantsCopperRNA, Ribosomal, 16SWater Pollutants

Identifiers

PMID22976340
OpenAlexW2048417607

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.