Evidence map›Paper›PMID 22975882›Full record

ArticleThe ISME journal2013

Microbial communities in the subglacial waters of the Vatnajökull ice cap, Iceland.

Viggó Thór Marteinsson, Árni Rúnarsson, Andri Stefánsson, Thorsteinn Thorsteinsson, Tómas Jóhannesson, Sveinn H Magnússon, Eyjólfur Reynisson, Bergur Einarsson, Nicole Wade, Hilary G Morrison and 1 more

Abstract read
In one paragraph

Article in The ISME journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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  15. Physical and chemical controls on habitats for life in the deep subsurface beneath continents and ice.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Viggó Thór MarteinssonMATIS, Department of Food Safety, Environment, and Genetics, Reykjavík, Iceland. viggo@matis.is
Árni Rúnarsson
Andri Stefánsson
Thorsteinn Thorsteinsson
Tómas Jóhannesson
Sveinn H Magnússon
Eyjólfur Reynisson
Bergur Einarsson
Nicole Wade
Hilary G Morrison
Eric Gaidos

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Subglacial lakes beneath the Vatnajökull ice cap in Iceland host endemic communities of microorganisms adapted to cold, dark and nutrient-poor waters, but the mechanisms by which these microbes disseminate under the ice and colonize these lakes are unknown. We present new data on this subglacial microbiome generated from samples of two subglacial lakes, a subglacial flood and a lake that was formerly subglacial but now partly exposed to the atmosphere. These data include parallel 16S rRNA gene amplicon libraries constructed using novel primers that span the v3-v5 and v4-v6 hypervariable regions. Archaea were not detected in either subglacial lake, and the communities are dominated by only five bacterial taxa. Our paired libraries are highly concordant for the most abundant taxa, but estimates of diversity (abundance-based coverage estimator) in the v4-v6 libraries are 3-8 times higher than in corresponding v3-v5 libraries. The dominant taxa are closely related to cultivated anaerobes and microaerobes, and may occupy unique metabolic niches in a chemoautolithotrophic ecosystem. The populations of the major taxa in the subglacial lakes are indistinguishable (>99% sequence identity), despite separation by 6 km and an ice divide; one taxon is ubiquitous in our Vatnajökull samples. We propose that the glacial bed is connected through an aquifer in the underlying permeable basalt, and these subglacial lakes are colonized from a deeper, subterranean microbiome.

Indexed as

EcosystemWater MicrobiologyBacteriaDNA, BacterialFresh WaterGene LibraryIceIcelandLakesRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialIceRNA, Ribosomal, 16S

Identifiers

PMID22975882
PMCPMC3554413

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.