Evidence map›Paper›PMID 22975378›Full record

ArticleCancer cell2012

Integrative analysis reveals an outcome-associated and targetable pattern of p53 and cell cycle deregulation in diffuse large B cell lymphoma.

Stefano Monti, Bjoern Chapuy, Kunihiko Takeyama, Scott J Rodig, Yansheng Hao, Kelly T Yeda, Haig Inguilizian, Craig Mermel, Treeve Currie, Ahmet Dogan and 8 more

Abstract read
In one paragraph

Article in Cancer cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Stefano MontiBroad Institute, Cambridge, MA 02142, USA.
Bjoern Chapuy
Kunihiko Takeyama
Scott J Rodig
Yansheng Hao
Kelly T Yeda
Haig Inguilizian
Craig Mermel
Treeve Currie
Ahmet Dogan
Jeffery L Kutok
Rameen Beroukhim
Donna Neuberg
Thomas M Habermann
Gad Getz
Andrew L Kung
Todd R Golub
Margaret A Shipp

Funding

The Role of BCL-6 in Berminal Center FormationP01CA092625 · NCI · DANA-FARBER CANCER INSTITUTE · PI SHIPP, MARGARET A · 2001 to 2011
$32.9M
NCI NIH HHS P01 CA092625NCI NIH HHS P01CA092625
6 · The paper itself

Abstract

Diffuse large B cell lymphoma (DLBCL) is a clinically and biologically heterogeneous disease with a high proliferation rate. By integrating copy number data with transcriptional profiles and performing pathway analysis in primary DLBCLs, we identified a comprehensive set of copy number alterations (CNAs) that decreased p53 activity and perturbed cell cycle regulation. Primary tumors either had multiple complementary alterations of p53 and cell cycle components or largely lacked these lesions. DLBCLs with p53 and cell cycle pathway CNAs had decreased abundance of p53 target transcripts and increased expression of E2F target genes and the Ki67 proliferation marker. CNAs of the CDKN2A-TP53-RB-E2F axis provide a structural basis for increased proliferation in DLBCL, predict outcome with current therapy, and suggest targeted treatment approaches.

Indexed as

DNA Copy Number VariationsGenes, p53Cell CycleCell ProliferationCyclin-Dependent Kinase Inhibitor p16E2F Transcription FactorsGene Expression ProfilingGenes, p16HumansKi-67 AntigenLymphoma, Large B-Cell, DiffuseMolecular Sequence DataTumor Suppressor Protein p53Cyclin-Dependent Kinase Inhibitor p16E2F Transcription FactorsKi-67 AntigenTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID22975378
PMCPMC3778921

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.