ArticleJournal of virology2012
Characterization of the genome, proteome, and structure of yersiniophage ϕR1-37.
Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 40 citations in OpenAlex.
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- Isolation and characterization of Yersinia phage fMtkYen3-01.Archives of virology · 2024Article
- fENko-Kae01 is a flagellum-specific jumbo phage infecting Klebsiella aerogenes.BMC microbiology · 2024Article
- Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase.Nature communications · 2022Article
- BtuB-Dependent Infection of the T5-likeViruses · 2021Article
- Viruses with U-DNA: New Avenues for Biotechnology.Viruses · 2021Review
- Emerging Aspects of Jumbo Bacteriophages.Infection and drug resistance · 2021Review
- Multisubunit RNA Polymerases of Jumbo Bacteriophages.Viruses · 2020Review
- The Podovirus ϕ80-18 Targets the Pathogenic American Biotype 1B Strains ofFrontiers in microbiology · 2020Article
- Review
- Global Proteomic Profiling ofJournal of virology · 2019Article
- A non-canonical multisubunit RNA polymerase encoded by the AR9 phage recognizes the template strand of its uracil-containing promoters.Nucleic acids research · 2017Article
- The action of Escherichia coli CRISPR-Cas system on lytic bacteriophages with different lifestyles and development strategies.Nucleic acids research · 2017Article
- To Be or Not To Be T4: Evidence of a Complex Evolutionary Pathway of Head Structure and Assembly in GiantFrontiers in microbiology · 2017Article
- Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB.Frontiers in microbiology · 2017Article
- Jumbo Bacteriophages: An Overview.Frontiers in microbiology · 2017Article
- Identification of Essential Genes in the Salmonella Phage SPN3US Reveals Novel Insights into Giant Phage Head Structure and Assembly.Journal of virology · 2016Article
- Yersinia enterocolitica-Specific Infection by Bacteriophages TG1 and ϕR1-RT Is Dependent on Temperature-Regulated Expression of the Phage Host Receptor OmpF.Applied and environmental microbiology · 2016Article
- The genome of AR9, a giant transducing Bacillus phage encoding two multisubunit RNA polymerases.Virology · 2016Article
- RNA-Sequencing Reveals the Progression of Phage-Host Interactions between φR1-37 and Yersinia enterocolitica.Viruses · 2016Article
Corrections and comments
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Authors and funding
13 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The bacteriophage vB_YecM-ϕR1-37 (ϕR1-37) is a lytic yersiniophage that can propagate naturally in different Yersinia species carrying the correct lipopolysaccharide receptor. This large-tailed phage has deoxyuridine (dU) instead of thymidine in its DNA. In this study, we determined the genomic sequence of phage ϕR1-37, mapped parts of the phage transcriptome, characterized the phage particle proteome, and characterized the virion structure by cryo-electron microscopy and image reconstruction. The 262,391-bp genome of ϕR1-37 is one of the largest sequenced phage genomes, and it contains 367 putative open reading frames (ORFs) and 5 tRNA genes. Mass-spectrometric analysis identified 69 phage particle structural proteins with the genes scattered throughout the genome. A total of 269 of the ORFs (73%) lack homologues in sequence databases. Based on terminator and promoter sequences identified from the intergenic regions, the phage genome was predicted to consist of 40 to 60 transcriptional units. Image reconstruction revealed that the ϕR1-37 capsid consists of hexameric capsomers arranged on a T=27 lattice similar to the bacteriophage ϕKZ. The tail of ϕR1-37 has a contractile sheath. We conclude that phage ϕR1-37 is a representative of a novel phage type that carries the dU-containing genome in a ϕKZ-like head.
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