Evidence map›Paper›PMID 22972499›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2012

Identification of E2F target genes that are rate limiting for dE2F1-dependent cell proliferation.

Anabel Herr, Michelle Longworth, Jun-Yuan Ji, Michael Korenjak, David M Macalpine, Nicholas J Dyson

Open access · bronzeAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. E2F regulation of theProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
  4. Discovery of progenitor cell signatures by time-series synexpression analysis during Drosophila embryonic cell immortalization.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Anabel HerrMassachusetts General Hospital Cancer Center and Harvard Medical School, Laboratory of Molecular Oncology, Charlestown, MA 02129, USA.
Michelle Longworth
Jun-Yuan Ji
Michael Korenjak
David M Macalpine
Nicholas J Dyson
Harvard University · USDuke University Hospital · USMassachusetts General Hospital · USMolecular Oncology (United States) · US

Funding

The E2F/RBF networkR01GM053203 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI DYSON, NICHOLAS J · 1995 to 2010
$4.2M
MUTAGENESIS OF THE PRB POCKET DOMAINR01CA064402 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI DYSON, NICHOLAS J · 1994 to 2015
$4.1M
The Systematic Identification and Analysis of Replication Origins in DrosophilaU01HG004279 · NHGRI · DUKE UNIVERSITY · PI MACALPINE, DAVID M · 2007 to 2011
$2.6M
The Origins of Chromosomal Instability in Human Tumor CellsR01CA155202 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI DYSON, NICHOLAS J · 2011 to 2015
$1.8M
Condensin-mediated genome organization and transcriptional regulationR01GM102400 · NIGMS · CLEVELAND CLINIC LERNER COM-CWRU · PI LONGWORTH, MICHELLE S · 2012 to 2016
$1.5M
The Enhancement and Suppression of E2F-Dependent ApoptosisR01GM081607 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI DYSON, NICHOLAS J · 2008 to 2011
$1.3M
NCI NIH HHS CA64402NCI NIH HHS R01 CA064402NCI NIH HHS R01 CA155202NHGRI NIH HHS HG004279NHGRI NIH HHS U01 HG004279NIGMS NIH HHS GM53203NIGMS NIH HHS R01 GM053203NIGMS NIH HHS R01 GM081607NIGMS NIH HHS R01 GM102400
6 · The paper itself

Abstract

backgroundMicroarray studies have shown that the E2F transcription factor influences the expression of many genes but it is unclear how many of these targets are important for E2F-mediated control of cell proliferation.

resultsWe assembled a collection of mutant alleles of 44 dE2F1-dependent genes and tested whether these could modify visible phenotypes caused by the tissue-specific depletion of dE2F1. More than half of the mutant alleles dominantly enhanced de2f1-dsRNA phenotypes suggesting that the in vivo functions of dE2F1 can be limited by the reduction in the level of expression of many different targets. Unexpectedly, several mutant alleles suppressed de2f1-dsRNA phenotypes. One of the strongest of these suppressors was Orc5. Depletion of ORC5 increased proliferation in cells with reduced dE2F1 and specifically elevated the expression of dE2F1-regulated genes. Importantly, these effects were independent of dE2F1 protein levels, suggesting that reducing the level of ORC5 did not interfere with the general targeting of dE2F1.

conclusionsWe propose that the interaction between ORC5 and dE2F1 may reflect a feedback mechanism between replication initiation proteins and dE2F1 that ensures that proliferating cells maintain a robust level of replication proteins for the next cell cycle.

Indexed as

AllelesAnimalsCell ProliferationDrosophilaDrosophila ProteinsE2F Transcription FactorsImmunohistochemistryIn Situ HybridizationModels, BiologicalOrigin Recognition ComplexTranscription FactorsDrosophila ProteinsE2f1 protein, DrosophilaE2F Transcription FactorsOrigin Recognition ComplexTranscription Factors

Identifiers

PMID22972499
PMCPMC3760379
OpenAlexW2014616546

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.