ArticleMicrobes and environments2012
Identification of active denitrifiers in rice paddy soil by DNA- and RNA-based analyses.
Article in Microbes and environments, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 71 citations in OpenAlex.
- Field test of a bioaugmentation agent for the bioremediation of chlorinated ethene contaminated sites.Biologia futura · 2024Article
- Effects of Different Types of Human Disturbance on Total and Nitrogen-Transforming Bacteria in Haihe River.Life (Basel, Switzerland) · 2022Article
- Diverse key nitrogen cycling genes nifH, nirS and nosZ associated with Pichavaram mangrove rhizospheres as revealed by culture-dependent and culture-independent analyses.Archives of microbiology · 2022Article
- Recent trends in nitrogen cycle and eco-efficient nitrogen management strategies in aerobic rice system.Frontiers in plant science · 2022Review
- Improving Nitrogen Use Efficiency in Aerobic Rice Based on Insights Into the Ecophysiology of Archaeal and Bacterial Ammonia Oxidizers.Frontiers in plant science · 2022Review
- Structural and functional shifts of soil prokaryotic community due to Eucalyptus plantation and rotation phase.Scientific reports · 2020Article
- Dissimilatory Nitrate Reduction to Ammonium and Responsible Microbes in Japanese Rice Paddy Soil.Microbes and environments · 2020Article
- Article
- Denitrifying Bacteria Active in Woodchip Bioreactors at Low-Temperature Conditions.Frontiers in microbiology · 2019Article
- Presence of Cu-Type (NirK) and cdMicrobes and environments · 2018Article
- Predominant but Previously-overlooked Prokaryotic Drivers of Reductive Nitrogen Transformation in Paddy Soils, Revealed by Metatranscriptomics.Microbes and environments · 2017Article
- Cutaneous Bacterial Communities of a Poisonous Salamander: a Perspective from Life Stages, Body Parts and Environmental Conditions.Microbial ecology · 2017Article
- A Community-Based Culture Collection for Targeting Novel Plant Growth-Promoting Bacteria from the Sugarcane Microbiome.Frontiers in plant science · 2017Article
- Denitrification and Nitrate-Dependent Fe(II) Oxidation in Various Pseudogulbenkiania Strains.Microbes and environments · 2016Article
- Influence of Vinasse Application in the Structure and Composition of the Bacterial Community of the Soil under Sugarcane Cultivation.International journal of microbiology · 2016Article
- Higher diversity and abundance of denitrifying microorganisms in environments than considered previously.The ISME journal · 2015Article
- Effects of water-saving irrigation on emissions of greenhouse gases and prokaryotic communities in rice paddy soil.Microbial ecology · 2014Article
- Genome-wide identification, phylogenetic analysis, expression profiling, and protein-protein interaction properties of TOPLESS gene family members in tomato.Journal of experimental botany · 2014Article
- Relationship between soil type and N₂O reductase genotype (nosZ) of indigenous soybean bradyrhizobia: nosZ-minus populations are dominant in Andosols.Microbes and environments · 2014Article
- Ecological perspectives on microbes involved in N-cycling.Microbes and environments · 2014Review
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Denitrification occurs markedly in rice paddy fields; however, few microbes that are actively involved in denitrification in these environments have been identified. In this study, we used a laboratory soil microcosm system in which denitrification activity was enhanced. DNA and RNA were extracted from soil at six time points after enhancing denitrification activity, and quantitative PCR and clone library analyses were performed targeting the 16S rRNA gene and denitrification functional genes (nirS, nirK and nosZ) to clarify which microbes are actively involved in denitrification in rice paddy soil. Based on the quantitative PCR results, transcription levels of the functional genes agreed with the denitrification activity, although gene abundance did not change at the DNA level. Diverse denitrifiers were detected in clone library analysis, but comparative analysis suggested that only some of the putative denitrifiers, especially those belonging to the orders Neisseriales, Rhodocyclales and Burkholderiales, were actively involved in denitrification in rice paddy soil.
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