Evidence map›Paper›PMID 22971058›Full record

ArticleACS chemical biology2012

Novel selective allosteric and bitopic ligands for the S1P(3) receptor.

Euijung Jo, Barun Bhhatarai, Emanuela Repetto, Miguel Guerrero, Sean Riley, Steven J Brown, Yasushi Kohno, Edward Roberts, Stephan C Schürer, Hugh Rosen

Abstract read
In one paragraph

Article in ACS chemical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Observational
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Selective coupling of the S1PJournal of molecular and cellular cardiology · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Euijung JoDepartment of Chemical Physiology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Barun Bhhatarai
Emanuela Repetto
Miguel Guerrero
Sean Riley
Steven J Brown
Yasushi Kohno
Edward Roberts
Stephan C Schürer
Hugh Rosen
Scripps Research Institute · USUniversity of Miami · USKyorin University · JP

Funding

UHTS Implementation(Florida)U54MH084512 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI SCHURER, STEPHAN C · 2008 to 2013
$89.2M
Project 3U54GM094618 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI STEVENS, RAYMOND C · 2010 to 2014
$17.1M
Scripps Research Institute Molecular Screen Center(RMI)U54MH074404 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI ROSEN, HUGH · 2005 to 2007
$11.6M
Novel Chemical and Immunological Approaches to Influenza TherapyU01AI074564 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI OLDSTONE, MICHAEL B · 2007 to 2011
$8.1M
S1P Receptor subtypes: Regulating lymphocyte traffickingR01AI055509 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI ROSEN, HUGH · 2004 to 2008
$2.3M
NIAID NIH HHS R01 AI055509NIAID NIH HHS R01-AI055509NIAID NIH HHS U01 AI074564NIAID NIH HHS U01-AI074564NIGMS NIH HHS GM-094618NIGMS NIH HHS U54 GM094618NIMH NIH HHS U54 MH074404NIMH NIH HHS U54 MH084512NIMH NIH HHS U54-MH084512
6 · The paper itself

Abstract

Sphingosine 1-phosphate (S1P) is a lysophospholipid signaling molecule that regulates important biological functions, including lymphocyte trafficking and vascular development, by activating G protein-coupled receptors for S1P, namely, S1P(1) through S1P(5). Here, we map the S1P(3) binding pocket with a novel allosteric agonist (CYM-5541), an orthosteric agonist (S1P), and a novel bitopic antagonist (SPM-242). With a combination of site-directed mutagenesis, ligand competition assay, and molecular modeling, we concluded that S1P and CYM-5541 occupy different chemical spaces in the ligand binding pocket of S1P(3). CYM-5541 allowed us to identify an allosteric site where Phe263 is a key gate-keeper residue for its affinity and efficacy. This ligand lacks a polar moiety, and the novel allosteric hydrophobic pocket permits S1P(3) selectivity of CYM-5541 within the highly similar S1P receptor family. However, a novel S1P(3)-selective antagonist, SPM-242, in the S1P(3) pocket occupies the ligand binding spaces of both S1P and CYM-5541, showing its bitopic mode of binding. Therefore, our coordinated approach with biochemical data and molecular modeling, based on our recently published S1P(1) crystal structure data in a highly conserved set of related receptors with a shared ligand, provides a strong basis for the successful optimization of orthosteric, allosteric, and bitopic modulators of S1P(3).

Indexed as

Allosteric SiteAnimalsCHO CellsCricetinaeCricetulusLigandsModels, MolecularPhosphorylationRadioligand AssayReceptors, LysosphingolipidLigandsReceptors, Lysosphingolipid

Identifiers

PMID22971058
PMCPMC3528827
OpenAlexW1996424091

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.