Evidence map›Paper›PMID 22970927›Full record

ArticleJournal of the American Chemical Society2012

Tyrosine deprotonation yields abundant and selective backbone cleavage in peptide anions upon negative electron transfer dissociation and ultraviolet photodissociation.

Jared B Shaw, Aaron R Ledvina, Xing Zhang, Ryan R Julian, Jennifer S Brodbelt

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Integration of electrochemistry with ultra-performance liquid chromatography/mass spectrometry.European journal of mass spectrometry (Chichester, England) · 2015
    Article
  3. Review
  4. Article
  5. The ornithine effect in peptide cation dissociation.Journal of mass spectrometry : JMS · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jared B ShawDepartment of Chemistry and Biochemistry, The University of Texas at Austin, Austin, Texas 78712, United States.
Aaron R Ledvina
Xing Zhang
Ryan R Julian
Jennifer S Brodbelt

Funding

UV Photodissociation for Acidic and Basic Proteome CharacterizationR21GM099028 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S. · 2011 to 2012
$384k
NIGMS NIH HHS R21 GM099028NIGMS NIH HHS R21GM099028
6 · The paper itself

Abstract

Tyrosine deprotonation in peptides yields preferential electron detachment upon NETD or UVPD, resulting in prominent N-Cα bond cleavage N-terminal to the tyrosine residue. UVPD of iodo-tyrosine-modified peptides was used to generate localized radicals on neutral tyrosine side chains by homolytic cleavage of the C-I bond. Subsequent collisional activation of the radical species yielded the same preferential cleavage of the adjacent N-terminal N-Cα bond. LC-MS/MS analysis of a tryptic digest of BSA demonstrated that these cleavages are regularly observed for peptides when using high-pH mobile phases.

Indexed as

ProtonsUltraviolet RaysAmino Acid SequenceAnionsElectronsMolecular Sequence DataPeptidesPhotochemical ProcessesProteolysisTyrosineAnionsPeptidesProtonsTyrosine

Identifiers

PMID22970927
PMCPMC3459303

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.