Evidence map›Paper›PMID 22970303›Full record

ArticlePloS one2012

Heart of endosymbioses: transcriptomics reveals a conserved genetic program among arbuscular mycorrhizal, actinorhizal and legume-rhizobial symbioses.

Alexandre Tromas, Boris Parizot, Nathalie Diagne, Antony Champion, Valérie Hocher, Maïmouna Cissoko, Amandine Crabos, Hermann Prodjinoto, Benoit Lahouze, Didier Bogusz and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Salt Stress Tolerance inPlants (Basel, Switzerland) · 2022
    Article
  3. Review
  4. Article
  5. WillMetabolites · 2021
    Article
  6. Article
  7. Whole-genome resequencing identifies quantitative trait loci associated with mycorrhizal colonization of soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Alexandre TromasLaboratoire Commun de Microbiologie IRD/ISRA/UCAD, Centre de Recherche de Bel Air, Dakar, Senegal.
Boris Parizot
Nathalie Diagne
Antony Champion
Valérie Hocher
Maïmouna Cissoko
Amandine Crabos
Hermann Prodjinoto
Benoit Lahouze
Didier Bogusz
Laurent Laplaze
Sergio Svistoonoff
Cheikh Anta Diop University · SNInstitut de Recherche pour le Développement · FRRhizogenesis Lab · FRDiversité, adaptation et développement des plantes · FRVIB-UGent Center for Plant Systems Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To improve their nutrition, most plants associate with soil microorganisms, particularly fungi, to form mycorrhizae. A few lineages, including actinorhizal plants and legumes are also able to interact with nitrogen-fixing bacteria hosted intracellularly inside root nodules. Fossil and molecular data suggest that the molecular mechanisms involved in these root nodule symbioses (RNS) have been partially recycled from more ancient and widespread arbuscular mycorrhizal (AM) symbiosis. We used a comparative transcriptomics approach to identify genes involved in establishing these 3 endosymbioses and their functioning. We analysed global changes in gene expression in AM in the actinorhizal tree C. glauca. A comparison with genes induced in AM in Medicago truncatula and Oryza sativa revealed a common set of genes induced in AM. A comparison with genes induced in nitrogen-fixing nodules of C. glauca and M. truncatula also made it possible to define a common set of genes induced in these three endosymbioses. The existence of this core set of genes is in accordance with the proposed recycling of ancient AM genes for new functions related to nodulation in legumes and actinorhizal plants.

Indexed as

SymbiosisFabaceaeGene ExpressionGenes, BacterialGenes, FungalGenes, PlantMycorrhizaeRhizobiumTranscriptome

Identifiers

PMID22970303
PMCPMC3435296
OpenAlexW2003033802

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.