Evidence map›Paper›PMID 22970219›Full record

ArticlePloS one2012

Diversity and complexity in chromatin recognition by TFII-I transcription factors in pluripotent embryonic stem cells and embryonic tissues.

Aleksandr V Makeyev, Badam Enkhmandakh, Seung-Hyun Hong, Pujan Joshi, Dong-Guk Shin, Dashzeveg Bayarsaihan

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Aleksandr V MakeyevDepartment of Reconstructive Sciences, Center for Regenerative Medicine and Skeletal Development, School of Dentistry, University of Connecticut Health Center, Farmington, Connecticut, United States of America.
Badam Enkhmandakh
Seung-Hyun Hong
Pujan Joshi
Dong-Guk Shin
Dashzeveg Bayarsaihan
UConn Health · USUniversity of Connecticut · US

Funding

ROLE OF TFII-I IN CRANIOFACIAL DEVELOPMENTR01DE017205 · NIDCR · UNIVERSITY OF LOUISVILLE · PI BAYARSAIHAN, DASHZEVEG · 2006 to 2009
$1.5M
Role of TFII-I in Craniofacial DevelopmentK02DE018412 · NIDCR · UNIVERSITY OF LOUISVILLE · PI BAYARSAIHAN, DASHZEVEG · 2007 to 2011
$477k
NIDCR NIH HHS K02 DE018412NIDCR NIH HHS K02 DE18412NIDCR NIH HHS R01 DE017205NIDCR NIH HHS R01DE017205
6 · The paper itself

Abstract

GTF2I and GTF2IRD1 encode a family of closely related transcription factors TFII-I and BEN critical in embryonic development. Both genes are deleted in Williams-Beuren syndrome, a complex genetic disorder associated with neurocognitive, craniofacial, dental and skeletal abnormalities. Although genome-wide promoter analysis has revealed the existence of multiple TFII-I binding sites in embryonic stem cells (ESCs), there was no correlation between TFII-I occupancy and gene expression. Surprisingly, TFII-I recognizes the promoter sequences enriched for H3K4me3/K27me3 bivalent domain, an epigenetic signature of developmentally important genes. Moreover, we discovered significant differences in the association between TFII-I and BEN with the cis-regulatory elements in ESCs and embryonic craniofacial tissues. Our data indicate that in embryonic tissues BEN, but not the highly homologous TFII-I, is primarily recruited to target gene promoters. We propose a "feed-forward model" of gene regulation to explain the specificity of promoter recognition by TFII-I factors in eukaryotic cells.

Indexed as

AnimalsChromatinEmbryonic Stem CellsEpigenesis, GeneticMicePluripotent Stem CellsPromoter Regions, GeneticProtein BindingTranscription Factors, TFIIChromatinGtf2i protein, mouseTranscription Factors, TFII

Identifiers

PMID22970219
PMCPMC3438194
OpenAlexW2086106020

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.