Evidence map›Paper›PMID 22966150›Full record

ArticleSchizophrenia bulletin2012

Evaluation of HLA polymorphisms in relation to schizophrenia risk and infectious exposure.

Mikhil Bamne, Joel Wood, Kodavali Chowdari, Annie M Watson, Cemil Celik, Hader Mansour, Lambertus Klei, Ruben C Gur, L DiAnne Bradford, Monica E Calkins and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in Schizophrenia bulletin, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Transcriptomic and Proteomic Analysis of CRISPR/Cas9-MediatedInternational journal of molecular sciences · 2022
    Article
  6. Review
  7. Review
  8. Autoimmune Diseases and Psychotic Disorders.Frontiers in psychiatry · 2019
    Review
  9. Review
  10. Review
  11. Article
  12. Is Toxoplasma gondii a Trigger of Bipolar Disorder?Pathogens (Basel, Switzerland) · 2017
    Review
  13. Inflammation Effects on Motivation and Motor Activity: Role of Dopamine.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2017
    Review
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 12 institutions in 1 country.

Mikhil BamneDepartment of Psychiatry, University of Pittsburgh School of Medicine, Western Psychiatric Institute and Clinic, Pittsburgh, PA, USA.
Joel Wood
Kodavali Chowdari
Annie M Watson
Cemil Celik
Hader Mansour
Lambertus Klei
Ruben C Gur
L DiAnne Bradford
Monica E Calkins
Alberto B Santos
Neil Edwards
Joseph Kwentus
Joseph P McEvoy
Trina B Allen
Robert M Savage
Henry A Nasrallah
Raquel E Gur
Rodney T Perry
Rodney C P Go
Bernie Devlin
Robert Yolken
Vishwajit L Nimgaonkar
University of Pittsburgh · USUniversity of Alabama at Birmingham · USUniversity of Pennsylvania · USDuke Medical Center · USDuke University Hospital · USMedical University of South Carolina · USMorehouse School of Medicine · USUniversity Hospital and Clinics · USUniversity of Cincinnati Medical Center · USUniversity of Mississippi Medical Center · USUniversity of Pittsburgh Medical Center · USUniversity of Tennessee Health Science Center · US

Funding

Schizophrenia Liability Genes among African AmericansR01MH066181 · NIMH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GO, RODNEY CHUN PUNG · 2002 to 2006
$4.7M
Schizophrenia Liability Genes among African AmericansR01MH066004 · NIMH · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI SANTOS, ALBERTO B. · 2002 to 2006
$2.9M
Schizophrenia Liability Genes among African AmericansR01MH066121 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI GUR, RAQUEL E · 2002 to 2006
$2.9M
Schizophrenia Liability Genes Among African-AmericansR01MH066263 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NIMGAONKAR, VISHWAJIT LAXMIKANT · 2002 to 2006
$2.5M
Schizophrenia Liability Genes Among African AmericansR01MH066006 · NIMH · MOREHOUSE SCHOOL OF MEDICINE · PI BRADFORD, L. DIANNE · 2002 to 2006
$2.4M
Schizophenia Libility Genes among African-AmericansR01MH066050 · NIMH · DUKE UNIVERSITY · PI MCEVOY, JOSEPH PATRICK · 2002 to 2006
$2.4M
Schizophrenic Liability Genes among African- AmericansR01MH066049 · NIMH · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI EDWARDS, NEIL B · 2002 to 2006
$2.2M
Schizophrenia Liability Genes among African-AmericansR01MH066005 · NIMH · UNIVERSITY OF MISSISSIPPI MEDICAL CENTER · PI KWENTUS, JOSEPH A · 2002 to 2006
$1.8M
A Prospective Study of Endophenotypes in At-Risk Youths and Their SiblingsK08MH079364 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI CALKINS, MONICA E · 2007 to 2011
$750k
Schizophrenia Liability Genes Among African AmericansR01MH066278 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DEVLIN, BERNIE · 2002 to 2006
$489k
NIMH NIH HHS K08 MH79364NIMH NIH HHS MH66006NIMH NIH HHS MH66278NIMH NIH HHS R01 MH066005NIMH NIH HHS R01 MH066049NIMH NIH HHS R01 MH66004NIMH NIH HHS R01 MH66050NIMH NIH HHS R01 MH66121NIMH NIH HHS R01 MH66181-03NIMH NIH HHS R01 MH66263
6 · The paper itself

Abstract

backgroundGenome-wide association studies (GWAS) implicate single nucleotide polymorphisms (SNPs) on chromosome 6p21.3-22.1, the human leukocyte antigen (HLA) region, as common risk factors for schizophrenia (SZ). Other studies implicate viral and protozoan exposure. Our study tests chromosome 6p SNPs for effects on SZ risk with and without exposure.

methodGWAS-significant SNPs and ancestry-informative marker SNPs were analyzed among African American patients with SZ (n = 604) and controls (n = 404). Exposure to herpes simplex virus, type 1 (HSV-1), cytomegalovirus (CMV), and Toxoplasma gondii (TOX) was assayed using specific antibody assays.

resultsFive SNPs were nominally associated with SZ, adjusted for population admixture (P < .05, uncorrected for multiple comparisons). These SNPs were next analyzed in relation to infectious exposure. Multivariate analysis indicated significant association between rs3130297 genotype and HSV-1 exposure; the associated allele was different from the SZ risk allele.

conclusionsWe propose a model for the genesis of SZ incorporating genomic variation in the HLA region and neurotropic viral exposure for testing in additional, independent African American samples.

Indexed as

AdultBlack or African AmericanButyrophilinsCase-Control StudiesChromosomes, Human, Pair 6CytomegalovirusCytomegalovirus InfectionsFemaleGenetic Predisposition to DiseaseGenotypeHerpes SimplexHerpesvirus 1, HumanHLA AntigensHumansMaleMembrane ProteinsBTN3A2 protein, humanButyrophilinsHLA AntigensMembrane Proteins

Identifiers

PMID22966150
PMCPMC3494045
OpenAlexW2154100015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.