Evidence map›Paper›PMID 22966046›Full record

ArticleInfection and immunity2012

Escherichia coli isolates that carry vat, fyuA, chuA, and yfcV efficiently colonize the urinary tract.

Rachel R Spurbeck, Paul C Dinh, Seth T Walk, Ann E Stapleton, Thomas M Hooton, Lisa K Nolan, Kwang Sik Kim, James R Johnson, Harry L T Mobley

Abstract read
In one paragraph

Article in Infection and immunity, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 175 papers.

0numbers the graph read from it
0cells of the map it votes in
175citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

175 citing papers in PubMed.

  1. Article
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  3. Article
  4. Virulence and Invasion Profiles ofPathogens (Basel, Switzerland) · 2026
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  5. Genomic Characterization of Selected Multidrug-ResistantAnimals : an open access journal from MDPI · 2026
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  10. Fluoroquinolone-Resistant Avian PathogenicPathogens (Basel, Switzerland) · 2026
    Article
  11. Article
  12. Article
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  14. Review
  15. Infective endocarditis caused byThe Journal of international medical research · 2025
    Article
  16. Article
  17. Molecular Characterization and Antibiotic Resistance of Avian PathogenicAnimals : an open access journal from MDPI · 2025
    Article
  18. Article
  19. Shiga Toxin-ProducingMicroorganisms · 2025
    Article
  20. Comparative Analysis of ESBL Phenotypes and Antimicrobial Resistance inMicrobial drug resistance (Larchmont, N.Y.) · 2025
    Article

115 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Rachel R SpurbeckDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Paul C Dinh
Seth T Walk
Ann E Stapleton
Thomas M Hooton
Lisa K Nolan
Kwang Sik Kim
James R Johnson
Harry L T Mobley

Funding

Prevention of UTI With A Vaginal ProbioticP01DK053369 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAMM, WALTER E · 1998 to 2007
$8.5M
Reciprocal Control of Motility and Adherence in UTIR01AI059722 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PEARSON, MELANIE M. · 2005 to 2024
$7.4M
E. coli virulence gene expression during clinical UTIs in womenR01DK094777 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MOBLEY, HARRY L. · 2011 to 2019
$3.6M
MOLECULAR PATHOGENESIS OF E COLI UTIR01AI043363 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MOBLEY, HARRY L. · 1998 to 2012
$3.4M
Lactobacillus probiotic for prevention of recurrent UTIR01DK088830 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAPLETON, ANN E · 2011 to 2015
$3.0M
ROLE OF BLADDER AND VAGINAL EPITHELIAL CAVEOLAE IN UTIsR01DK062863 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAPLETON, ANN E · 2003 to 2007
$919k
Probiotic Lactobacilli and Vaginal EpitheliumR01DK070906 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAPLETON, ANN E · 2005 to 2007
$664k
Vaccine to prevent E. coli urinary tract infectionR56AI043363 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MOBLEY, HARRY L. · 2014 to 2014
$351k
NIAID NIH HHS AI43363NIAID NIH HHS AI59722NIAID NIH HHS R01 AI043363NIAID NIH HHS R01 AI059722NIAID NIH HHS R56 AI043363NIDDK NIH HHS DK94777NIDDK NIH HHS P01 DK053369NIDDK NIH HHS R01 DK062863NIDDK NIH HHS R01 DK070906NIDDK NIH HHS R01 DK088830NIDDK NIH HHS R01 DK094777
6 · The paper itself

Abstract

Extraintestinal Escherichia coli (ExPEC), a heterogeneous group of pathogens, encompasses avian, neonatal meningitis, and uropathogenic E. coli strains. While several virulence factors are associated with ExPEC, there is no core set of virulence factors that can be used to definitively differentiate these pathotypes. Here we describe a multiplex of four virulence factor-encoding genes, yfcV, vat, fyuA, and chuA, highly associated with uropathogenic E. coli strains that can distinguish three groups of E. coli: diarrheagenic and animal-associated E. coli strains, human commensal and avian pathogenic E. coli strains, and uropathogenic and neonatal meningitis E. coli strains. Furthermore, human intestinal isolates that encode all four predictor genes express them during exponential growth in human urine and colonize the bladder in the mouse model of ascending urinary tract infection in higher numbers than human commensal strains that do not encode the four predictor genes (P = 0.02), suggesting that the presence of the predictors correlates with uropathogenic potential.

Indexed as

AnimalsBirdsCarrier StateDNA, BacterialEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsFecesFemaleHumansInfant, NewbornMiceMice, Inbred CBAMultiplex Polymerase Chain ReactionUrinary TractUrinary Tract InfectionsDNA, BacterialEscherichia coli ProteinsVirulence Factors

Identifiers

PMID22966046
PMCPMC3497434

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.