Evidence map›Paper›PMID 22965747›Full record

ArticleMolecules and cells2012

ATAF2, a NAC transcription factor, binds to the promoter and regulates NIT2 gene expression involved in auxin biosynthesis.

Sung Un Huh, Suk-Bae Lee, Hwang Hyun Kim, Kyung-Hee Paek

Open access · hybridAbstract read
In one paragraph

Article in Molecules and cells, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Comprehensive Analysis ofInternational journal of molecular sciences · 2023
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  6. Effects ofBreeding science · 2023
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  7. Auxin Interactions with Other Hormones in Plant Development.Cold Spring Harbor perspectives in biology · 2021
    Review
  8. Article
  9. Taking the Wheel -Frontiers in plant science · 2021
    Review
  10. Frontiers in plant science · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. The Soybean GmNAC019 Transcription Factor Mediates Drought Tolerance inInternational journal of molecular sciences · 2019
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sung Un HuhSchool of Life Sciences and Biotechnology, Korea University, Seoul, 136-701, Korea.
Suk-Bae Lee
Hwang Hyun Kim
Kyung-Hee Paek
Korea University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transcription factor ATAF2, one of the plant specific NAC family genes, is known as repressor of pathogenesis-related genes and responsive to the diverse defense-related hormones, pathogen infection, and wounding stress. Furthermore, it is important to consider that tryptophan-dependant IAA biosynthesis pathway can be activated by wounding and pathogen. We found that ATAF2pro::GUS reporter was induced upon indole-3-acetonitrile (IAN) treatments. And ataf2 mutant showed reduced sensitivity to IAN whereas 35S::ATAF2 plants showed hyper-sensitivity to IAN. IAN biosynthesis required nitrilase involved in the conversion of IAN to an auxin, indole-3-acetic acid (IAA). We found that the NIT2 gene was repressed in ataf2 knockout plants. Expression of both ATAF2 and NIT2 genes was induced by IAN treatment. Transgenic plants overexpressing ATAF2 showed up-regulated NIT2 expression. ATAF2 activated promoter of the NIT2 gene in Arabidopsis protoplasts. Electrophoretic mobility shift assay revealed that NIT2 promoter region from position -117 to -82 contains an ATAF2 binding site where an imperfect palindrome sequence was critical to the protein-DNA interaction. These findings indicate that ATAF2 regulates NIT2 gene expression via NIT2 promoter binding.

Indexed as

Amino Acid SequenceAminohydrolasesArabidopsisArabidopsis ProteinsBinding SitesGene Expression Regulation, PlantGenes, ReporterIndoleacetic AcidsIndolesMolecular Sequence DataPlants, Genetically ModifiedPromoter Regions, GeneticRepressor ProteinsTranscription FactorsAminohydrolasesArabidopsis ProteinsATAF2 protein, Arabidopsisindole-3-acetonitrileIndoleacetic AcidsIndolesnitrilaseRepressor ProteinsTranscription Factors

Identifiers

PMID22965747
PMCPMC3887843
OpenAlexW2136213868

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.