Evidence map›Paper›PMID 22964155›Full record

ArticleEnvironmental toxicology and pharmacology2012

Genome-wide study of DNA methylation alterations in response to diazinon exposure in vitro.

Xiao Zhang, Andrew D Wallace, Pan Du, Simon Lin, Andrea A Baccarelli, Hongmei Jiang, Nadereh Jafari, Yinan Zheng, Hehuang Xie, Marcelo Bento Soares and 2 more

Open access · greenAbstract read
In one paragraph

Article in Environmental toxicology and pharmacology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 55 citations in OpenAlex.

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  9. Modified CDKN2B (p15) and CDKN2A (p16) DNA methylation profiles in urban pesticide applicators.Environmental science and pollution research international · 2019
    Article
  10. Article
  11. Mechanisms of organophosphorus pesticide toxicity in the context of airway hyperreactivity and asthma.American journal of physiology. Lung cellular and molecular physiology · 2018
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Toxicopathic changes and genotoxic effects in liver of rat following exposure to diazinon.Environmental science and pollution research international · 2016
    Article
  17. Review
  18. Zebrafish as a model to study the role of DNA methylation in environmental toxicology.Environmental science and pollution research international · 2015
    Review
  19. Longitudinal Study of DNA Methylation of Inflammatory Genes and Cancer Risk.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Xiao ZhangDepartment of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. xiao-zhang@northwestern.edu
Andrew D Wallace
Pan Du
Simon Lin
Andrea A Baccarelli
Hongmei Jiang
Nadereh Jafari
Yinan Zheng
Hehuang Xie
Marcelo Bento Soares
Warren A Kibbe
Lifang Hou
Northwestern University · USMarshfield Clinic · USNorth Carolina State University · US

Funding

MULTIDISCIPLINARY CLINICAL AND TRANSLATIONAL SCIENCE (MCTS) PROGRAM (UL1)UL1RR025741 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GREENLAND, PHILIP · 2008 to 2011
$24.7M
Multidisciplinary Clinical and Translational Science (MCTS) Program (UL1)UL1TR000150 · NCATS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LLOYD-JONES, DONALD M · 2012 to 2013
$10.1M
DNA methylation alterations in response to pesticides exposureRC1ES018461 · NIEHS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI HOU, LIFANG · 2009 to 2010
$995k
NCATS NIH HHS UL1 TR000150NCRR NIH HHS UL1 RR025741NIEHS NIH HHS 1RC1ES018461-01NIEHS NIH HHS RC1 ES018461
6 · The paper itself

Abstract

Pesticide exposure has repeatedly been associated with cancers. However, molecular mechanisms are largely undetermined. In this study, we examined whether exposure to diazinon, a common organophosphate that has been associated with cancers, could induce DNA methylation alterations. We conducted genome-wide DNA methylation analyses on DNA samples obtained from human hematopoietic K562 cell exposed to diazinon and ethanol using the Illumina Infinium HumanMethylation27 BeadChip. Bayesian-adjusted t-tests were used to identify differentially methylated gene promoter CpG sites. We identified 1069 CpG sites in 984 genes with significant methylation changes in diazinon-treated cells. Gene ontology analysis demonstrated that some genes are tumor suppressor genes, such as TP53INP1 (3.0-fold, q-value <0.001) and PTEN (2.6-fold, q-value <0.001), some genes are in cancer-related pathways, such as HDAC3 (2.2-fold, q-value=0.002), and some remain functionally unknown. Our results provided direct experimental evidence that diazinon may modify gene promoter DNA methylation levels, which may play a pathological role in cancer development.

Indexed as

DNA MethylationDiazinonGenome-Wide Association StudyHumansInsecticidesK562 CellsDiazinonInsecticides

Identifiers

PMID22964155
PMCPMC3514648
OpenAlexW1998491541

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.