ArticleBioinformatics (Oxford, England)2012
Fractionation, rearrangement and subgenome dominance.
Article in Bioinformatics (Oxford, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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12 citing papers in PubMed, 30 citations in OpenAlex.
- Genome evolution through polyploidy: Enhancing plant stress resilience in agriculture.Proceedings of the National Academy of Sciences of the United States of America · 2026Review
- The adaptive evolution of Euryale ferox to the aquatic environment through paleo-hexaploidization.The Plant journal : for cell and molecular biology · 2022Article
- A tetraploidization event shaped the Aquilaria sinensis genome and contributed to the ability of sesquiterpenes synthesis.BMC genomics · 2021Article
- The genome evolution and low-phosphorus adaptation in white lupin.Nature communications · 2020Article
- Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa.BMC genomics · 2019Article
- Alignment of Rutaceae Genomes Reveals Lower Genome Fractionation Level Than Eudicot Genomes Affected by Extra Polyploidization.Frontiers in plant science · 2019Article
- Two Highly Similar Poplar Paleo-subgenomes Suggest an Autotetraploid Ancestor of Salicaceae Plants.Frontiers in plant science · 2017Article
- Synteny and comparative analysis of miRNA retention, conservation, and structure across Brassicaceae reveals lineage- and sub-genome-specific changes.Functional & integrative genomics · 2016Article
- Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris.Proceedings of the National Academy of Sciences of the United States of America · 2015Article
- Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates.Frontiers in neuroscience · 2015Article
- Practical aliquoting of flowering plant genomes.BMC bioinformatics · 2013Article
- A consolidation algorithm for genomes fractionated after higher order polyploidization.BMC bioinformatics · 2012Article
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
motivationFractionation is arguably the greatest cause of gene order disruption following whole genome duplication, causing severe biases in chromosome rearrangement-based estimates of evolutionary divergence.
resultsWe show how to correct for this bias almost entirely by means of a 'consolidation' algorithm for detecting and suitably transforming identifiable regions of fractionation. We characterize the process of fractionation and the performance of the algorithm through realistic simulations. We apply our method to a number of core eudicot genomes, we and by studying the fractionation regions detected, are able to address topical issues in polyploid evolution. AVAILABILITY AND IMPLEMENTATION: Code for the consolidation algorithm, and sample data, is available at: http://137.122.149.195/Software/Fractionation/fractionation.html CONTACT: sankoff@uottawa.ca.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.