Evidence map›Paper›PMID 22961899›Full record

ArticleApplied and environmental microbiology2012

Pleiotropic control of secondary metabolism and morphological development by KsbC, a butyrolactone autoregulator receptor homologue in Kitasatospora setae.

Aiyada Aroonsri, Shigeru Kitani, Junko Hashimoto, Ikuko Kosone, Miho Izumikawa, Mamoru Komatsu, Nobuyuki Fujita, Yoko Takahashi, Kazuo Shin-ya, Haruo Ikeda and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 39 citations in OpenAlex.

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  10. Nonocarbolines A-E,Antibiotics (Basel, Switzerland) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Aiyada AroonsriInternational Center for Biotechnology, Osaka University, Suita, Osaka, Japan.
Shigeru Kitani
Junko Hashimoto
Ikuko Kosone
Miho Izumikawa
Mamoru Komatsu
Nobuyuki Fujita
Yoko Takahashi
Kazuo Shin-ya
Haruo Ikeda
Takuya Nihira
Japan Biological Informatics Consortium · JPKitasato University · JPOsaka University · JPMahidol University · THNational Institute of Technology and Evaluation · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The γ-butyrolactone autoregulator signaling cascades have been shown to control secondary metabolism and/or morphological development among many Streptomyces species. However, the conservation and variation of the regulatory systems among actinomycetes remain to be clarified. The genome sequence of Kitasatospora setae, which also belongs to the family Streptomycetaceae containing the genus Streptomyces, has revealed the presence of three homologues of the autoregulator receptor: KsbA, which has previously been confirmed to be involved only in secondary metabolism; KsbB; and KsbC. We describe here the characterization of ksbC, whose regulatory cluster closely resembles the Streptomyces virginiae barA locus responsible for the autoregulator signaling cascade. Deletion of the gene ksbC resulted in lowered production of bafilomycin and a defect of aerial mycelium formation, together with the early and enhanced production of a novel β-carboline alkaloid named kitasetaline. A putative kitasetaline biosynthetic gene cluster was identified, and its expression in a heterologous host led to the production of kitasetaline together with JBIR-133, the production of which is also detected in the ksbC disruptant, and JBIR-134 as novel β-carboline alkaloids, indicating that these genes were biosynthetic genes for β-carboline alkaloid and thus are the first such genes to be discovered in bacteria.

Indexed as

Gene Expression Regulation, BacterialSignal Transduction4-ButyrolactoneBacterial ProteinsCarbolinesGene DeletionHyphaeMacrolidesMetabolic Networks and PathwaysStreptomycetaceae4-ButyrolactoneBacterial Proteinsbafilomycin ACarbolinesMacrolides

Identifiers

PMID22961899
PMCPMC3485943
OpenAlexW2012641635

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.