Evidence map›Paper›PMID 22961651›Full record

ArticleChembiochem : a European journal of chemical biology2012

The α-ketoglutarate/Fe(II)-dependent dioxygenase VldW is responsible for the formation of validamycin B.

Khaled H Almabruk, Shumpei Asamizu, Ada Chang, Sheril G Varghese, Taifo Mahmud

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Khaled H AlmabrukDepartment of Pharmaceutical Sciences, Oregon State University, 203 Pharmacy Building, Corvallis, OR 97331, USA.
Shumpei Asamizu
Ada Chang
Sheril G Varghese
Taifo Mahmud
Oregon State University · US

Funding

BIOSYNTHESIS APPROACH TO NOVEL BIOACTIVE AMINOCYCLITOLSR01AI061528 · NIAID · OREGON STATE UNIVERSITY · PI MAHMUD, TAIFO · 2004 to 2010
$1.5M
NIAID NIH HHS R01 AI061528NIAID NIH HHS R01AI061528
6 · The paper itself

Abstract

From A to B: Through detailed biochemical investigations, we discovered that VldW, an α-ketoglutarate/Fe(II)-dependent dioxygenase, regioselectively hydroxylates validamycin A to validamycin B. The results provide insights into the biosynthesis of hydroxylated validamycins and could be used to control the metabolic outcomes of the validamycin pathway.

Indexed as

DioxygenasesGlycosyltransferasesInositolKetoglutaric AcidsStereoisomerismStreptomycesDioxygenasesGlycosyltransferasesInositolKetoglutaric AcidsValG protein, Streptomyces hygroscopicusvalidamycins

Identifiers

PMID22961651
PMCPMC3517013
OpenAlexW1985194920

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.