Evidence map›Paper›PMID 22961134›Full record

ArticlePlant physiology2012

Impaired auxin biosynthesis in the defective endosperm18 mutant is due to mutational loss of expression in the ZmYuc1 gene encoding endosperm-specific YUCCA1 protein in maize.

Jamila Bernardi, Alessandra Lanubile, Qin-Bao Li, Dibyendu Kumar, Ales Kladnik, Sam D Cook, John J Ross, Adriano Marocco, Prem S Chourey

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 156 citations in OpenAlex.

  1. Review
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  10. Review
  11. Plants (Basel, Switzerland) · 2024
    Article
  12. Article
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  15. Article
  16. Review
  17. Article
  18. Article
  19. MaizeInternational journal of molecular sciences · 2023
    Article
  20. Roles of auxin pathways in maize biology.Journal of experimental botany · 2023
    Review

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Jamila BernardiInstitute of Agronomy, Genetics and Crop Science, Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy.
Alessandra Lanubile
Qin-Bao Li
Dibyendu Kumar
Ales Kladnik
Sam D Cook
John J Ross
Adriano Marocco
Prem S Chourey
Università Cattolica del Sacro Cuore · ITUniversity of Ljubljana · SIUniversity of Tasmania · AUAgricultural Research Service · USUnited States Department of Agriculture · USUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The phytohormone auxin (indole-3-acetic acid [IAA]) plays a fundamental role in vegetative and reproductive plant development. Here, we characterized a seed-specific viable maize (Zea mays) mutant, defective endosperm18 (de18) that is impaired in IAA biosynthesis. de18 endosperm showed large reductions of free IAA levels and is known to have approximately 40% less dry mass, compared with De18. Cellular analyses showed lower total cell number, smaller cell volume, and reduced level of endoreduplication in the mutant endosperm. Gene expression analyses of seed-specific tryptophan-dependent IAA pathway genes, maize Yucca1 (ZmYuc1), and two tryptophan-aminotransferase co-orthologs were performed to understand the molecular basis of the IAA deficiency in the mutant. Temporally, all three genes showed high expression coincident with high IAA levels; however, only ZmYuc1 correlated with the reduced IAA levels in the mutant throughout endosperm development. Furthermore, sequence analyses of ZmYuc1 complementary DNA and genomic clones revealed many changes specific to the mutant, including a 2-bp insertion that generated a premature stop codon and a truncated YUC1 protein of 212 amino acids, compared with the 400 amino acids in the De18. The putative, approximately 1.5-kb, Yuc1 promoter region also showed many rearrangements, including a 151-bp deletion in the mutant. Our concurrent high-density mapping and annotation studies of chromosome 10, contig 395, showed that the De18 locus was tightly linked to the gene ZmYuc1. Collectively, the data suggest that the molecular changes in the ZmYuc1 gene encoding the YUC1 protein are the causal basis of impairment in a critical step in IAA biosynthesis, essential for normal endosperm development in maize.

Indexed as

Gene Expression Regulation, PlantBase SequenceBiosynthetic PathwaysCell SizeCloning, MolecularEndospermEscherichia coliGenes, PlantGenetic LociIndoleacetic AcidsMutationOrgan SpecificityPhysical Chromosome MappingPlant ProteinsPolymerase Chain ReactionPolymorphism, GeneticIndoleacetic AcidsPlant ProteinsRecombinant Proteins

Identifiers

PMID22961134
PMCPMC3490580
OpenAlexW2148094599

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.