Evidence map›Paper›PMID 22960911›Full record

ArticleThe Plant cell2012

IAA-Ala Resistant3, an evolutionarily conserved target of miR167, mediates Arabidopsis root architecture changes during high osmotic stress.

Natsuko Kinoshita, Huan Wang, Hiroyuki Kasahara, Jun Liu, Cameron Macpherson, Yasunori Machida, Yuji Kamiya, Matthew A Hannah, Nam-Hai Chua

Abstract read
In one paragraph

Article in The Plant cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed.

  1. Review
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  16. Article
  17. Auxin and abiotic stress responses.Journal of experimental botany · 2023
    Review
  18. bra-miR167a TargetsInternational journal of molecular sciences · 2023
    Article
  19. Article
  20. Article

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Natsuko KinoshitaLaboratory of Plant Molecular Biology, The Rockefeller University, New York, NY 10065, USA.
Huan Wang
Hiroyuki Kasahara
Jun Liu
Cameron Macpherson
Yasunori Machida
Yuji Kamiya
Matthew A Hannah
Nam-Hai Chua

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The functions of microRNAs and their target mRNAs in Arabidopsis thaliana development have been widely documented; however, roles of stress-responsive microRNAs and their targets are not as well understood. Using small RNA deep sequencing and ATH1 microarrays to profile mRNAs, we identified IAA-Ala Resistant3 (IAR3) as a new target of miR167a. As expected, IAR3 mRNA was cleaved at the miR167a complementary site and under high osmotic stress miR167a levels decreased, whereas IAR3 mRNA levels increased. IAR3 hydrolyzes an inactive form of auxin (indole-3-acetic acid [IAA]-alanine) and releases bioactive auxin (IAA), a central phytohormone for root development. In contrast with the wild type, iar3 mutants accumulated reduced IAA levels and did not display high osmotic stress-induced root architecture changes. Transgenic plants expressing a cleavage-resistant form of IAR3 mRNA accumulated high levels of IAR3 mRNAs and showed increased lateral root development compared with transgenic plants expressing wild-type IAR3. Expression of an inducible noncoding RNA to sequester miR167a by target mimicry led to an increase in IAR3 mRNA levels, further confirming the inverse relationship between the two partners. Sequence comparison revealed the miR167 target site on IAR3 mRNA is conserved in evolutionarily distant plant species. Finally, we showed that IAR3 is required for drought tolerance.

Indexed as

AmidohydrolasesArabidopsisArabidopsis ProteinsBiological EvolutionDroughtsGene Expression ProfilingGene Expression Regulation, PlantHigh-Throughput Nucleotide SequencingHydroponicsIndoleacetic AcidsMicroRNAsModels, BiologicalOligonucleotide Array Sequence AnalysisOsmosisPhenotypePlant Growth RegulatorsAmidohydrolasesArabidopsis ProteinsIAR3 protein, ArabidopsisIndoleacetic AcidsMicroRNAsPlant Growth RegulatorsRNA, MessengerRNA, Plant

Identifiers

PMID22960911
PMCPMC3480289

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.