Evidence map›Paper›PMID 2296087›Full record

ArticleJournal of virology1990

Transcriptionally active genome regions are preferred targets for retrovirus integration.

U Scherdin, K Rhodes, M Breindl

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 1990. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 212 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Toward Combined Cell and Gene Therapy for Genodermatoses.Cold Spring Harbor perspectives in biology · 2020
    Review
  5. Sites of retroviral DNA integration: From basic research to clinical applications.Critical reviews in biochemistry and molecular biology · 2016
    Review
  6. Review
  7. Vector integration and tumorigenesis.Human gene therapy · 2014
    Article
  8. Article
  9. Article
  10. Review
  11. Genotoxicity of retroviral hematopoietic stem cell gene therapy.Expert opinion on biological therapy · 2011
    Review
  12. Review
  13. Lentiviral vector integration profiles differ in rodent postmitotic tissues.Molecular therapy : the journal of the American Society of Gene Therapy · 2011
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Using retroviruses as a mutagenesis tool to explore the zebrafish genome.Briefings in functional genomics & proteomics · 2008
    Review
  20. Review

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

U ScherdinDepartment of Biology, San Diego State University, California 92182-0057.
K Rhodes
M Breindl
San Diego State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have analyzed the transcriptional activity of cellular target sequences for Moloney murine leukemia virus integration in mouse fibroblasts. At least five of the nine random, unselected integration target sequences studied showed direct evidence for transcriptional activity by hybridization to nuclear run-on transcripts prepared from uninfected cells. At least four of the sequences contained multiple recognition sites for several restriction enzymes that cut preferentially in CpG-rich islands, indicating integration into 5' or 3' ends or flanking regions of genes. Assuming that only a minor fraction (less than 20%) of the genome is transcribed in mammalian cells, we calculated the probability that this association of retroviral integration sites with transcribed sequences is due to chance to be very low (1.6 x 10(-2]. Thus, our results strongly suggest that transcriptionally active genome regions are preferred targets for retrovirus integration.

Indexed as

Genes, ViralTranscription, GeneticAnimalsCells, CulturedCloning, MolecularDinucleoside PhosphatesLysogenyMiceMoloney murine leukemia virusPlasmidsRestriction MappingCpG dinucleotideDinucleoside Phosphates

Identifiers

PMID2296087
PMCPMC249188
OpenAlexW1600900798

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.